G24796 (rad51)


Basic Information

Item Value
gene id G24796
gene name rad51
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39436982 ~ 39439002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33376
AATGAATGgttataattatgacttagattgagagagaaatatataattGGTCACATTATCTCCGAGCTCTAGTTACACAATATGTTTACCATATCTGgcacagctaacctagctagcgttagctaacccATAGAAATGGAATTTATCCACTTGAACATTTGACAACTTTTCTGCCCTGTTTGCCCGCTGTGAGAACATTAAGATAAATTTAAAACTAGCAGAAACTAAGAAAAACGCCCTGAAGTGAATAAATCGGTATTAAAACCAAACAcgagaaaaacaaagagaaaacagtaaagagaaAATCACTACTCGTGAACAATCGTACCTAGTTCACCTAGCTTAGCTAATCTATAGCTATatctagcgttagcttagctacaACAACAGGGCGGTAGTAGCTTTTGCTAGATTTATTTTACAAAGCCAGGAGAGCTTAGTTAAGTTAGCCAAAACCAAAATGACCCGAGACGAGTGTGGTCGAGTGTGTTGCTCTGCTCTGGTGTGCTGCAGTGTATCTGACCGCAGAGCGTCCAGATAACCCCGCTGTATCTGGATCAGTTCAGCTAACCTGCACTGAATCAGagcggcggcggcagcagcagcaacagtaaCAGCTAACGCGCCTCTCCTCTTCTAACACGTTAATGCAGCTGAATCCGCTGAGACCCGCCCGGACCGGCGCTGTCAGAGGTCGCCTACTGTCGCTGTTTCTGGGGCTGTATTGATATATCATTAATAACTGAattacagataaataaacagaagtagaGGAGCTCTCTCACCGACTGGCCTCACAACCGAGTTTCCCG
>TU33377
CCAAAATCTTGTCAGCTTTGGCCTCACTGATGCCCTTAATGTTGATCAGTTCTTTTTTGGGGGCATATGCTACAGCCTCGATGGTGTGAAAGCCCGCATCTTCCAGCTTTTTCAGGTCACTGGCACTGATACCACATTGCTCCAGGCGGTTCAGCGGCTGTGGTCCAAAACTATCCTCTTCTTCAACTTCTGCCTCCACCTCCACTCTGCTTTCACTTCTCATAGCCATCTTCAATTACCGACTGGCCTCACAACCGAGTTTCCCG

Function

symbol description
rad51 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Acts upstream of or within several processes, including double-strand break repair via homologous recombination; hematopoietic stem cell proliferation; and response to methylmercury. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in brain; gill; liver; musculature system; and testis. Used to study Fanconi anemia. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group R; breast cancer; congenital mirror movement disorder; and ovarian cancer. Orthologous to human RAD51 (RAD51 recombinase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33376 True 812 lncRNA 0.54 2 39438164 39439002
TU33377 False 266 lncRNA 0.21 3 39436982 39439002

Neighbor

gene id symbol gene type direction distance location
LOC103042020 LOC108432804 coding upstream 9211 39412683 ~ 39427771 (+)
LOC103043278 LOC103043278,LOC108432833 coding upstream 68689 39365807 ~ 39368293 (+)
LOC103045608 LOC108411441 coding upstream 214746 39214181 ~ 39222236 (+)
rars2 rars2 coding upstream 265027 39155626 ~ 39171955 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 283554 39147532 ~ 39153428 (+)
LOC103032515 NA coding downstream 229508 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 255651 39694653 ~ 39697487 (+)
c3h6orf58 NA coding downstream 546143 39985145 ~ 39992197 (+)
cspp1 NA coding downstream 871939 40310941 ~ 40319844 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281 coding downstream 1067414 40506416 ~ 40726249 (+)
G24790 zc3h14,LOC107742714,LOC107685361,LOC107593284,LOC102797374 non-coding upstream 28083 39405816 ~ 39408899 (+)
G24772 tmed10 non-coding upstream 49507 39382242 ~ 39387475 (+)
G24775 NA non-coding upstream 89020 39347646 ~ 39347962 (+)
G24748 NA non-coding upstream 185139 39242442 ~ 39251843 (+)
G24742 slc35a1,LOC106607707 non-coding upstream 244811 39184526 ~ 39192171 (+)
G24815 NA non-coding downstream 87484 39526486 ~ 39530263 (+)
G24833 NA non-coding downstream 182851 39621853 ~ 39626693 (+)
G24834 LOC108432800 non-coding downstream 198401 39637403 ~ 39638604 (+)
G24837 NA non-coding downstream 209386 39648388 ~ 39653019 (+)
G24978 NA non-coding downstream 406368 39845370 ~ 39848248 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 39104 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 96011 39325083 ~ 39340971 (+)
G24719 NA other upstream 391201 39045170 ~ 39045781 (+)
G24583 NA other upstream 489760 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 510000 38925696 ~ 38926982 (+)
G24972 NA other downstream 380274 39819276 ~ 39825718 (+)
G25601 NA other downstream 2952638 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 3058720 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 3820618 43259620 ~ 43262099 (+)
rps29 NA other downstream 3921467 43360469 ~ 43363444 (+)

Expression


Co-expression Network