G24834 (LOC108432800)


Basic Information

Item Value
gene id G24834
gene name LOC108432800
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39637403 ~ 39638604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33415
ACTGGTTTTGATGTAATCAGCTTTTTATTCCGACCACATTTACAAAAGTGCAATCTGATTGCAGTATTTTACAACTCAAGATCATTTTGGTGCAGTTCTGGAACCACGAATAAAACAAGGCGTAAATGACAGGATTTAGAGACGAATTCAGGTAGAAGAGAATTAAAACGTTGTTTACTATAAAGTGAGAAGAATCAATTGTGGTCGTAGAAGTCATCAAACTACAGGCATAGTATGGCACTAAACACACCAGAAACACAATCACCAGAATCCCAAGAACTTTGGCAGCTTTTCTCTCAGATTTCATGGAAACAGGGTTGACTTTGGAAATGGTTTGGATATTTTGATTAAGTTCTCTAATAGCACTGGCATGTCTCCTTGCAATGACGAAGATCTGCACATAAAGAACTACCATTAGAGTGCACGGAACAATAACTACAAAAAGCAGGTCAATCCATGAATCTGTTTCACCAAGAAAATAGAGGCATTCTCCAGGACACATAACTAAATCAGTGAAATTTCCACCTACATAAAACATTGCAAAGTTGTATAACAAGGAAAAGAACCATGCCAGTACTATGACTGTATGAATAACGGTTGATGTAATGCCCTGTGAGTAGAGAAAAGGGTGACTAAGAGCAACATAACGATCCAGAGCAATGAGAGCGACACTGCCCACAGAGACACTGGTTAACTGAAAACTaacaaaattaaacagaacACAGAAAATGTGCCCGAAAAGCCAACAAGATTCAATCAGCCATATAAAATGGAACGGCATCACAAAAAGCCCGACCAGAAAGTCTGATACAGccagagagagaatgagcatGTTAGTTGGAGTGTGGAGCTGCTTGAAGTGACAAACAGAGATAATGACAAGCAGATTTCCAAACACTGTTAACAGAACTACAGCAgaggcacacacacagagtaacaCATACACAGCGTTAGGTGCAGATCTCTCTGGACAGGAAAACTGCAGGCAGTAGTCAGTCTGATTAAGCTCTGTTGCATTCATTATTCCaccataaacataaacacagagGATTAAAAAGTGTGTTGGTCTTAATTATGCAAGGTTTCCTGTACGGCAGAACAAAAAGATAATTATCAACCAGTAATACTTCCCTTGCTACTCCTAATGGCCTCTCACACTTATACATTTTTGTCACTTCTTCTCCAACCCCCAGTGATTTGGG

Function

NR:

description
PREDICTED: trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33415 True 1202 lncRNA 0.42 1 39637403 39638604

Neighbor

gene id symbol gene type direction distance location
LOC103042020 LOC108432804 coding upstream 209632 39412683 ~ 39427771 (+)
LOC103043278 LOC103043278,LOC108432833 coding upstream 269110 39365807 ~ 39368293 (+)
LOC103045608 LOC108411441 coding upstream 415167 39214181 ~ 39222236 (+)
rars2 rars2 coding upstream 465448 39155626 ~ 39171955 (+)
LOC103047239 cf166,LOC103047239,LOC105017858,LOC100499587 coding upstream 483975 39147532 ~ 39153428 (+)
LOC103032515 NA coding downstream 29906 39668510 ~ 39669815 (+)
LOC103036628 NA coding downstream 56049 39694653 ~ 39697487 (+)
c3h6orf58 NA coding downstream 346541 39985145 ~ 39992197 (+)
cspp1 NA coding downstream 672337 40310941 ~ 40319844 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281 coding downstream 867812 40506416 ~ 40726249 (+)
G24833 NA non-coding upstream 10710 39621853 ~ 39626693 (+)
G24815 NA non-coding upstream 107140 39526486 ~ 39530263 (+)
G24796 rad51 non-coding upstream 198401 39436982 ~ 39439002 (+)
G24790 zc3h14,LOC107742714,LOC107685361,LOC107593284,LOC102797374 non-coding upstream 228504 39405816 ~ 39408899 (+)
G24772 tmed10 non-coding upstream 249928 39382242 ~ 39387475 (+)
G24837 NA non-coding downstream 9784 39648388 ~ 39653019 (+)
G24978 NA non-coding downstream 206766 39845370 ~ 39848248 (+)
G24981 NA non-coding downstream 208205 39846809 ~ 39847260 (+)
G25021 NA non-coding downstream 354097 39992701 ~ 39994485 (+)
G25024 themis non-coding downstream 365569 40004173 ~ 40013801 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 239525 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 296432 39325083 ~ 39340971 (+)
G24719 NA other upstream 591622 39045170 ~ 39045781 (+)
G24583 NA other upstream 690181 38939357 ~ 38947222 (+)
G24594 smim8 other upstream 710421 38925696 ~ 38926982 (+)
G24972 NA other downstream 180672 39819276 ~ 39825718 (+)
G25601 NA other downstream 2753036 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 2859118 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 3621016 43259620 ~ 43262099 (+)
rps29 NA other downstream 3721865 43360469 ~ 43363444 (+)

Expression


Co-expression Network