LOC111191798


Basic Information

Item Value
gene id LOC111191798
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39207480 ~ 39209265 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33461
AGCTCAGCTCGTTCAGTTcagctcgctcagctcagctccgctACGGACCGGACTCAGCTGCCACTAAGCTATAAGATGGAGTCATGAAATGTGACGGGACAGCCACCGAGGACTTCATATGGATGTGTACTTCGGAGCATCTCAAACATGCACCACAAAGACGTGGAGGACACACCGCTGTTTCTCTGGACCTAGAATCTTAATGAAAGTATAAtgatgttaagggaaggtgtaatggaaAGGTGTAATGGAAAGTTGTAAtggtgttaagggaaggtgtagtggaaaggtgtgatagtgttgagggaaggtgtaatagtgttgagggaaggtgtaatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtataatattgttaagggaaggtgtaatgttaaaggtgtaatagtgttaagggaaggtataatattgttaagggaaggtataatattgttaag
>XR_002649667.1
atttttatttggaaatgcaaTTTATGTGGAAAATTGTTAAGTTGATTACAACCAGTCAACGCTACTCTGATTTGCTGAGACCGCACGTCATCATAAACTCCACTCTGATATGCCGAGGCAAAACACGCTCAACATTTTTTGGCTGCTGCAGTAGCTCAGCTCGTTCAGTTcagctcgctcagctcagctccgctACGGACCGGACTCAGCTGCCACTAAGCTATAAGATGGAGTCATGAAATGTGACGGGACAGCCACCGAGGACTTCATATGGATGTGTACTTCGGAGCATCTCAAACATGCACCACAAAGACGTGGAGGACACACCGCTGTTTCTCTGGACCTAGAATCTTAATGAAAGTATAAtgatgttaagggaaggtgtaatggaaAGGTGTAATGGAAAGTTGTAAtggtgttaagggaaggtgtagtggaaaggtgtgatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33461 True 613 lncRNA 0.33 3 39207480 39209113
XR_002649667.1 False 489 lncRNA 0.44 3 39207714 39209265

Neighbor

gene id symbol gene type direction distance location
LOC103046220 LOC103046220 coding downstream 4483 39199438 ~ 39202997 (-)
slc35a1 slc35a1,LOC106607707 coding downstream 15399 39173990 ~ 39192081 (-)
LOC103047758 LOC108415889,LOC103369403 coding downstream 62729 39131248 ~ 39144751 (-)
bub1 NA coding downstream 79447 39099426 ~ 39128033 (-)
htr1e htr1e coding downstream 196388 38957039 ~ 39011092 (-)
LOC103044694 LOC103044694,LOC108414893 coding upstream 14618 39223883 ~ 39246614 (-)
LOC103044372 wdr26,LOC103044372,LOC108414895,LOC103363787 coding upstream 41779 39251044 ~ 39273282 (-)
LOC103034748 LOC107708319 coding upstream 65234 39274499 ~ 39306789 (-)
LOC103042954 NA coding upstream 147429 39356694 ~ 39361435 (-)
tmed10 tmed10 coding upstream 172935 39382200 ~ 39387492 (-)
G24860 NA non-coding downstream 19202 39187782 ~ 39188278 (-)
G24839 cf166,LOC103047239,LOC105017858,LOC100499587 non-coding downstream 54029 39147559 ~ 39153451 (-)
G24843 NA non-coding downstream 148914 39058005 ~ 39058566 (-)
G24842 NA non-coding downstream 149579 39057567 ~ 39057901 (-)
G24841 NA non-coding downstream 158523 39048757 ~ 39048957 (-)
LOC111196213 NA non-coding upstream 263559 39472824 ~ 39480344 (-)
G24911 NA non-coding upstream 289778 39499043 ~ 39499466 (-)
LOC111196215 NA non-coding upstream 305204 39514469 ~ 39524274 (-)
G24964 NA non-coding upstream 515190 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 610011 39819276 ~ 39825981 (-)
smim8 smim8 other downstream 280487 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 284563 38887626 ~ 38922917 (-)
wisp3 wisp3 other downstream 580428 38611046 ~ 38627052 (-)
ndufaf4 ndufaf4 other downstream 929765 38275466 ~ 38277715 (-)
ufl1 ufl1 other downstream 943806 38246771 ~ 38263674 (-)
LOC103043888 LOC108432835 other upstream 64370 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other upstream 100461 39309726 ~ 39324702 (-)
G24903 NA other upstream 245971 39455236 ~ 39458189 (-)
LOC111196341 NA other upstream 965997 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 2005156 41214421 ~ 41218829 (-)

Expression


Co-expression Network