LOC103043888 (LOC108432835)


Basic Information

Item Value
gene id LOC103043888
gene name LOC108432835
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39273635 ~ 39346916 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33467
CAGCAGCGCTCGAGCGACAGGACGGAGGGCTCGTGACACATTTCAGAcgaagaacacagGTAGACCGTAATGATGCCCACTCAGATGCGTGACCCCGTGTTGCAAGCTGGTTCTCTGCCCAGTTTGTCTCCCCTTGCTGGGTTTCCAGCCTCCACACTAACAGAGCAGCTCAGGCTTGTTGAGATGTACAGCCTCAGACCCTCAGATACTACCATAGAGCTTCTACACCCGGCAAAAGACCCTTCAGTTTTCTGCAGAGTGAGGTGGCTGATGAAGatgagaggagaaagaggaggagagagaagaaCAAAGTTGCAGCGGCGCGCTGTCgaaacaagaagaaagaaagaacaggcTACCTTCAGAAAgagtCAGAGCGTCTTGAACTACTGAATGGGGAGCTGAAGGCGCAAATTGAGTCCCTGAAGAAGGAGAAGCAGCACCTCGTCCACATGCTCAACCAGCACAGACCCACCTGTATCGTCCGTAGAGACAGTGTCCAGACCCCCGAGAAGGAACAGAACCCACTACTCCAGCAGCTCTCTCCTGCCCACTGATGCCCACTCGCCACATTCATGCTGCACGCTCCTGTCACAGCCTCTTACTGCACAGCATTGTACTGcatcagagtgtgtgtgcttgGGTTGTTAATCCTATGAGACCGGCTCTGTATCCCAGCAGCTGATCTCCAGGACCACCGCAGTGAGGAGAAGAGCCGAGAGTGGAGAGCTGTGAGGGGAAAAGAGGAGAAACTGAAGTACGAATTACTTTTCCCACCAGCGCTGCCCAGCCTCACTGATGAACACTGAAAAATGCTTTCCCGTTTTCTGTTGGCTAATTGGTGGGCCATTAGCTTCCATTCATTgtaagctacattagcctcttaGCTTCATGGGGGAAAGCAAACTCGGTGACGGACTTAAGACTTGCTTGTTTAGCAGATATATAGGAATTGCCTCTACAAACTTTCAACTTCCTTATCTGTTTGGAAACTGAGGTGCAGCACATTTGCCAGTCTTGCCATGTTTAAGAAGCCAAACTGAACTGAGaactgcattgtttttttttctttctcctctatAATGCACAACATATGTCTTCCATGACTACGGCTTCTCTCAGTGCACTGAAATGAGACATAGTCCAGATACACTCAGCTATAAAATCTggatcaaacaaacaaacaagcagcaATTATGACTTTTATACCATACCCTTACTTACCTTTCAATGAAGGTAAACCTAAGCTTTTTATGCCAAATTAAACTAGAGTATTTCTATTCATTAACTTTTTATCATAATTGTATTATAAACAACACCTTTCAAGTACATgagataaatataaattatatagtgAGTTGGATGATACAGCATAAATCTCATATCGCAATACATGCAgtaatttttattgtaataaatgaCACTATTTTCTGATATTCATACTTTTTAAGGGTTGGCAATATAGATGCTAGACTTTcaaaatattttctaaataagtaattttcattacagtgttttgttttgcctTCAGCAAGCCTGAATATTTGCAGCAAAACTGCAGGGTTGCGGTTCACTGTGGTTGTTTACAGGCATGTACAAGCATGGTGTTTCAGAAATGCTGATTGTACCCTTAAAACTCAGGATAGAGTATTGTGACCGATTTAtcacattattaataaataataatgacaaaTATATGACATATACAAAATGTATGACATATACAGTGTAAACTGATCTCTATTTAGTGTACGCTTACATTCGCACTCATTCTCTGACCAAGAAATAGCAGTGCATTAGAGATGTTCTGTATTTGTAGCATTATGGACCTACCTAATCGTATGGGTCTTACATTTTATGATACTGTTGAAATAGATGCCAAATCCTTTGAACAGCCACCAGATGGTGCCATTTGATAACCTCTTGTGTGCACAGATTTTGGcgctgttttaaatgtgtactgtatttgtatttgtatgttttttttttttactccgtGCATGCACTTGTACCTTGCACTCAATTATtgtattactattatatataatattctatcaCTTGATGTGGTgacatgtatttttgtattttggtcTTGCATGGAAGGCTCTGCTGTGCGGAGTCGctgaattgttttgttttatgaatAACGTGTTTTGTTATATGAAACCAATAAACCCAGGGAAAAACTAAGACTTGTTTGCCTTGCATTTATAatcatatatcaatatataataatactttttgtataataatatacacatttttaagAGTGATTGAAGAAGGCCTGGCACTTCATAAGCTTGTCAACAAATTGAGTTTTCTATAGTTGATTTAGTTAAAAC
>TU33468
CAGCAGCGCTCGAGCGACAGGACGGAGGGCTCGTGACACATTTCAGAcgaagaacacagGTAGACCGTAATGATGCCCACTCAGATGCGTGACCCCGTGTTGCAAGCTGGTTCTCTGCCCAGTTTGTCTCCCCTTGCTGGGTTTCCAGCCTCCACACTAACAGAGCAGCTCAGGCTTGTTGAGATGTACAGCCTCAGACCCTCAGATACTACCATAGAGCTTCTACACCCGGCAAAAGACCCTTCAGTTTTCTGCAGAGTGAGGTGGCTGATGAAGatgagaggagaaagaggaggagagagaagaaCAAAGTTGCAGCGGCGCGCTGTCgaaacaagaagaaagaaagaacaggcTACCTTCAGAAAgagtCAGAGCGTCTTGAACTACTGAATGGGGAGCTGAAGGCGCAAATTGAGTCCCTGAAGAAGGAGAAGCAGCACCTCGTCCACATGCTCAACCAGCACAGACCCACCTGTATCGTCCGTAGAGACAGTGTCCAGACCCCCGAGAAGGAACAGAACCCACTACTCCAGCAGCTCTCTCCTGCCCACTGATGCCCACTCGCCACATTCATGCTGCACGCTCCTGTCACAGCCTCTTACTGCACAGCATTGTACTGcatcagagtgtgtgtgcttgGGTTGTTAATCCTATGAGACCGGCTCTGTATCCCAGCAGCTGATCTCCAGGACCACCGCAGTGAGGAGAAGAGCCGAGAGTGGAGAGCTGTGAGGGGAAAAGAGGAGAAACTGAAGTACGAATTACTTTTCCCACCAGCGCTGCCCAGCCTCACTGATGAACACTGAAAAATGCTTTCCCGTTTTCTGTTGGCTAATTGGTGGGCCATTAGCTTCCATTCATTgtaagctacattagcctcttaGCTTCATGGGGGAAAGCAAACTCGGTGACGGACTTAAGACTTGCTTGTTTAGCAGATATATAGGAATTGCCTCTACAAACTTTCAACTTCCTTATCTGTTTGGAAACTGAGGTGCAGCACATTTGCCAGTCTTGCCATGTTTAAGAAGCCAAACTGAACTGAGaactgcattgtttttttttctttctcctctatAATGCACAACATATGTCTTCCATGACTACGGCTTCTCTCAGTGCACTGAAATGAGACATAGTCCAGATACACTCAGCTATAAAATCTggatcaaacaaacaaacaagcagcaATTATGACTTTTATACCATACCCTTACTTACCTTTCAATGAAGGTAAACCTAAGCTTTTTATGCCAAATTAAACTAGAGTATTTCTATTCATTAACTTTTTATCATAATTGTATTATAAACAACACCTTTCAAGTACATgagataaatataaattatatagtgAGTTGGATGATACAGCATAAATCTCATATCGCAATACATGCAgtaatttttattgtaataaatgaCACTATTTTCTGATATTCATACTTTTTAAGGGTTGGCAATATAGATGCTAGACTTTcaaaatattttctaaataagtaattttcattacagtgttttgttttgcctTCAGCAAGCCTGAATATTTGCAGCAAAACTGCAGGGTTGCGGTTCACTGTGGTTGTTTACAGGCATGTACAAGCATGGTGTTTCAGAAATGCTGATTGTACCCTTAAAACTCAGGATAGAGTATTGTGACCGATTTAtcacattattaataatatatatatatatatatatat
>TU33469
CAGCAGCGCTCGAGCGACAGGACGGAGGGCTCGTGACACATTTCAGAcgaagaacacagGTAGACCGTAATGATGCCCACTCAGATGCGTGACCCCGTGTTGCAAGCTGGTTCTCTGCCCAGTTTGTCTCCCCTTGCTGGGTTTCCAGCCTCCACACTAACAGAGCAGCTCAGGCTTGTTGAGATGTACAGCCTCAGACCCTCAGATACTACCATAGAGCTTCTACACCCGGCAAAAGACCCTTCAGTTTTCTGCAGAGTGAGGTGGCTGATGAAGatgagaggagaaagaggaggagagagaagaaCAAAGTTGCAGCGGCGCGCTGTCgaaacaagaagaaagaaagaacaggcTACCTTCAGAAAgagtCAGAGCGTCTTGAACTACTGAATGGGGAGCTGAAGGCGCAAATTGAGTCCCTGAAGAAGGAGAAGCAGCACCTCGTCCACATGCTCAACCAGCACAGACCCACCTGTATCGTCCGTAGAGACAGTGTCCAGACCCCCGAGAAGGAACAGAACCCACTACTCCAGCAGCTCTCTCCTGCCCACTGATGCCCACTCGCCACATTCATGCTGCACGCTCCTGTCACAGCCTCTTACTGCACAGCATTGTACTGcatcagagtgtgtgtgcttgGGTTGTTAATCCTATGAGACCGGCTCTGTATCCCAGCAGCTGATCTCCAGGACCACCGCAGTGAGGAGAAGAGCCGAGAGTGGAGAGCTGTGAGGGGAAAAGAGGAGAAACTGAAGTACGAATTACTTTTCCCACCAGCGCTGCCCAGCCTCACTGATGAACACTGAAAAATGCTTTCCCGTTTTCTGTTGGCTAATTGGTGGGCCATTAGCTTCCATTCATTgtaagctacattagcctcttaGCTTCATGGGGGAAAGCAAACTCGGTGACGGACTTAAGACTTGCTTGTTTAGCAGATATATAGGAATTGCCTCTACAAACTTTCAACTTCCTTATCTGTTTGGAAACTGAGGTGCAGCACATTTGCCAGTCTTGCCATGTTTAAGAAGCCAAACTGAACTGAGaactgcattgtttttttttctttctcctctatAATGCACAACATATGTCTTCCATGACTACGGCTTCTCTCAGTGCACTGAAATGAGACATAGTCCAGATACACTCAGCTATAAAATCTggatcaaacaaacaaacaagcagcaATTATGACTTTTATACCATACCCTTACTTACCTTTCAATGAAGGTAAACCTAAGCTTTTTATGCCAAATTAAACTAGAGTATTTCTATTCATTAACTTTTTATCATAATTGTATTATAAACAACACCTTTCAAGTACATgagataaatataaattatatagtgAGTTGGATGATACAGCATAAATCTCATATCGCAATACATGCAgtaatttttattgtaataaatgaCACTATTTTCTGATATTCATACTTTTTAAGGGTTGGCAATATAGATGCTAGACTTTcaaaatattttctaaataagtaattttcattacagtgttttgttttgcctTCAGCAAGCCTGAATATTTGCAGCAAAACTGCAGGGTTGCGGTTCCAAAGGTATCAGAGTGTGGTACAaataaatggggaaaaaaataagcatttcTTTTCAATCAGCTGCTTTTGCTATGCTGTAAATGCAAGTACTGTTCACTGTGGTTGTTTACAGGCATGTACAAGCATGGTGTTTCAGAAATGCTGATTGTACCCTTAAAACTCAGGATAGAGTATTGTGACCGATTTAtcacattattaataaataataatgacaaaTATATGACATATACAAAATGTATGACATATACAGTGTAAACTGATCTCTATTTAGTGTACGCTTACATTCGCACTCATTCTCTGACCAAGAAATAGCAGTGCATTAGAGATGTTCTGTATTTGTAGCATTATGGACCTACCTAATCGTATGGGTCTTACATTTTATGATACTGTTGAAATAGATGCCAAATCCTTTGAACAGCCACCAGATGGTGCCATTTGATAACCTCTTGTGTGCACAGATTTTGGcgctgttttaaatgtgtactgtatttgtatttgtatgttttttttttttactccgtGCATGCACTTGTACCTTGCACTCAATTATtgtattactattatatataatattctatcaCTTGATGTGGTgacatgtatttttgtattttggtcTTGCATGGAAGGCTCTGCTGTGCGGAGTCGctgaattgttttgttttatgaaACCAATAAACCCAGGGAAAAACTAAGACTTGTTTGCCTTGCATTTATAatcatatatcaatatataataatactttttgtataataatatacacatttttaagAGTGATTGAAGAAGGCCTGGCACTTCATAAGCTTGTCAACAAATTGAGTTTTCTATAGTTGATTTAGTTAAAAC
>XM_007259868.3
CATGCCGCCGCGGAGGCTATATAAGCGCGCTGATGCAACGAGACTCACAGCAGCGCTCGAGCGACAGGACGGAGGGCTCGTGACACATTTCAGAcgaagaacacagGTAGACCGTAATGATGCCCACTCAGATGCGTGACCCCGTGTTGCAAGCTGGTTCTCTGCCCAGTTTGTCTCCCCTTGCTGGGTTTCCAGCCTCCACACTAACAGAGCAGCTCAGGCTTGTTGAGATGTACAGCCTCAGACCCTCAGATACTACCATAGAGCTTCTACCCGGCAAAAGACCCTTCAGTTTTCTGCAGAGTGAGGTGGCTGATGAAGatgagaggagaaagaggaggagagagaagaaCAAAGTTGCAGCGGCGCGCTGTCgaaacaagaagaaagaaagaacaggcTACCTTCAGAAAgagtCAGAGCGTCTTGAACTACTGAATGGGGAGCTGAAGGCGCAAATTGAGTCCCTGAAGAAGGAGAAGCAGCACCTCGTCCACATGCTCAACCAGCACAGACCCACCTGTATCGTCCGTAGAGACAGTGTCCAGACCCCCGAGAAGGAACAGAACCCACTACTCCAGCAGCTCTCTCCTGCCCACTGATGCCCACTCGCCACATTCATGCTGCACGCTCCTGTCACAGCCTCTTACTGCACAGCATTGTACTGcatcagagtgtgtgtgcttgGGTTGTTAATCCTATGAGACCGGCTCTGTATCCCAGCAGCTGATCTCCAGGACCACCGCAGTGAGGAGAAGAGCCGAGAGTGGAGAGCTGTGAGGGGAAAAGAGGAGAAACTGAAGTACGAATTACTTTTCCCACCAGCGCTGCCCAGCCTCACTGATGAACACTGAAAAATGCTTTCCCGTTTTCTGTTGGCTAATTGGTGGGCCATTAGCTTCCATTCATTgtaagctacattagcctcttaGCTTCATGGGGGAAAGCAAACTCGGTGACGGACTTAAGACTTGCTTGTTTAGCAGATATATAGGAATTGCCTCTACAAACTTTCAACTTCCTTATCTGTTTGGAAACTGAGGTGCAGCACATTTGCCAGTCTTGCCATGTTTAAGAAGCCAAACTGAACTGAG

Function

NR:

description
PREDICTED: jun dimerization protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33467 False 2342 TUCP 0.40 5 39339026 39346869
TU33468 False 1700 TUCP 0.43 6 39273635 39346869
TU33469 True 2418 TUCP 0.40 5 39339026 39346869
XM_007259868.3 False 1094 mRNA 0.51 5 39340416 39346916

Neighbor

gene id symbol gene type direction distance location
LOC103044372 wdr26,LOC103044372,LOC108414895,LOC103363787 coding downstream 353 39251044 ~ 39273282 (-)
LOC103044694 LOC103044694,LOC108414893 coding downstream 27021 39223883 ~ 39246614 (-)
LOC103046220 LOC103046220 coding downstream 70638 39199438 ~ 39202997 (-)
slc35a1 slc35a1,LOC106607707 coding downstream 81554 39173990 ~ 39192081 (-)
LOC103047758 LOC108415889,LOC103369403 coding downstream 128884 39131248 ~ 39144751 (-)
LOC103042954 NA coding upstream 9778 39356694 ~ 39361435 (-)
tmed10 tmed10 coding upstream 35284 39382200 ~ 39387492 (-)
zc3h14 zc3h14,LOC102797374 coding upstream 52090 39399006 ~ 39408918 (-)
rad51 rad51 coding upstream 84747 39431663 ~ 39439043 (-)
LOC103041222 NA coding upstream 94154 39441070 ~ 39453885 (-)
LOC111191798 NA non-coding downstream 64370 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 85357 39187782 ~ 39188278 (-)
G24839 cf166,LOC103047239,LOC105017858,LOC100499587 non-coding downstream 120184 39147559 ~ 39153451 (-)
G24843 NA non-coding downstream 215069 39058005 ~ 39058566 (-)
G24842 NA non-coding downstream 215734 39057567 ~ 39057901 (-)
LOC111196213 NA non-coding upstream 125908 39472824 ~ 39480344 (-)
G24911 NA non-coding upstream 152127 39499043 ~ 39499466 (-)
LOC111196215 NA non-coding upstream 167553 39514469 ~ 39524274 (-)
G24964 NA non-coding upstream 377539 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 472360 39819276 ~ 39825981 (-)
smim8 smim8 other downstream 346642 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 350718 38887626 ~ 38922917 (-)
wisp3 wisp3 other downstream 646583 38611046 ~ 38627052 (-)
ndufaf4 ndufaf4 other downstream 995920 38275466 ~ 38277715 (-)
ufl1 ufl1 other downstream 1009961 38246771 ~ 38263674 (-)
G24903 NA other upstream 108320 39455236 ~ 39458189 (-)
LOC111196341 NA other upstream 828346 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1867505 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 2089125 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2509179 41856095 ~ 41865844 (-)

Expression


Co-expression Network