batf (batf,LOC107697118)


Basic Information

Item Value
gene id batf
gene name batf,LOC107697118
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39309726 ~ 39324702 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33473
AGCGGTGAACCGTGGTCGACTCAACACACTTCtctgtatacacacactctcactcatcaagagagagagagagaaaacaagagagagagagtgagtgagagagggagagagagaatagaggagAAGTCTTCTGGGTATGGCTCAAGGCTCTGACAGCAACGACACCAGCTACACCAAATCCCCATCACCGGGAAATAAACAGGGCTCCACAGACGAGATGAGGAAGGTGATGAGGCGGGAGAAGAATCGCATTGCGGCCCAGAAGAGCAGAATGAGGCAAACACAGAAGGCTGATAGCCTGCACTTGGAGAGTGAGAGTTTGGAGAAGGAAAACGCCGCTCTGAGAAAGGAGGTGAAGAGGTTGACGGAGGAGGCTAAATATCTTACCACGGTGTTGACCAACCACGAGGCAGTATGCACAGGTATAAGCCACGCTCCCACGGACCTGCTCTACGGCACACCTTTCCACCAGCACATCAACGTCAACGTCCAGCACTATCCGCTCTGACCTGTCACAGACAGAGAACTTTACAGTCTATTAAAAACCTTTACAATGGCCATTGACGATTATGGGGAGGGAAAGTGCAGAAGTTCGCCATCTGCTGGTTATGTTCAAAACATTCCGAATTGCCGTTCACTTCATGGCAAACTAAGAATCACGCAAAGCTTTCGAGGAACGTTCTTTCTGCGGGTGTACGCGAACAGCAGTTACAAATATTATAACTGTAATATACAACTGATACTACTGATGCCCATGCCACTTCGTGTGGGATTATGTCTGAGTTTGTGGTGTGTTTAAAAGGAAACACTCTGTGCTTGTCTTTTGCTGTCaacatgtactgtactgtaaacaATCTGTACTGTAGGATTACAAGTCATTGTCAACCTACGTTTTGAATgcaaacagcagggggcgctctGATCACTTTCCCTCCCATCTTCACGACAAGGTGAAAAATATACAAGTATGATTCACGACTTCGTGGAACAATAGAAGCTTACTCACAATGTGACGACTGGCGGATGAGGTGTTATTTCTGGTCCATACGTATCCTCCCGACAACAAAATAACAACCTAATGTTTGTTCTTTGTGGAATAAGAATAAGTATTTTATGATAAAACAAAAGATTCAAATAAACGAAGGAATAATGTATCTTTCTGTGTGTTGCTTTGAACTGAAATGTTTTGGTGCATGACAATGACGTACTGAATGTTCTAATGgatttattgtgattattttgaCGCTAGTGTTCAGCAAAGCCAGCAATATTgtggttttcattttttcatttttttttccttgtccCAGTTCTGTTGGGACAATAGCGTTTATTGTGATCTTgagcttttattttgtgtagttttaatAATTCTaactttatttagttatttttctattaactTAGTCTGTAAAAGATTAGGTGTTTACACTAGGCCTTATTGAGTCTTATTGAAATTTGAAATTTTGGACACCGGAGTGACTTTTTACCACTCAAAGTCCTTGACTCAGATTGCACTGACTGCTTCAGAAATGTACTTTTTGCATGAGTCTTTAGATTAACTGTCACAAAGATGTGTTGTATAAGCTGGCCTTGCAGCTAAAGAATGTGATTTTAATATTGGGGAACCTCAGTTTTTGAGGAAatctttaaagaaaataaaaaactccaTGTTAAC
>XM_007259867.3
TGCTACGCATTAAGCGGTGAACCGTGGTCGACTCAACACACTTCtctgtatacacacactctcactcatcaagagagagagagagaaaacaagagagagagagtgagtgagagagggagagagagaatagaggagAAGTCTTCTGGGTATGGCTCAAGGCTCTGACAGCAACGACACCAGCTACACCAAATCCCCATCACCGGGAAATAAACAGGGCTCCACAGACGAGATGAGGAAGGTGATGAGGCGGGAGAAGAATCGCATTGCGGCCCAGAAGAGCAGAATGAGGCAAACACAGAAGGCTGATAGCCTGCACTTGGAGAGTGAGAGTTTGGAGAAGGAAAACGCCGCTCTGAGAAAGGAGGTGAAGAGGTTGACGGAGGAGGCTAAATATCTTACCACGGTGTTGACCAACCACGAGGCAGTATGCACAGGTATAAGCCACGCTCCCACGGACCTGCTCTACGGCACACCTTTCCACCAGCACATCAACGTCAACGTCCAGCACTATCCGCTCTGACCTGTCACAGACAGAGAACTTTACAGTCTATTAAAAACCTTTACAATGGCCATTGACGATTATGGGGAGGGAAAGTGCAGAAGTTCGCCATCTGCTGGTTATGTTCAAAACATTCCGAATTGCCGTTCACTTCATGGCAAACTAAGAATCACGCAAAGCTTTCGAGGAACGTTCTTTCTGCGGGTGTACGCGAACAGCAGTTACAAATATTATAACTGTAATATACAACTGATACTACTGATGCCCATGCCACTTCGTGTGGGATTATGTCTGAGTTTGTGGTGTGTTTAAAAGGAAACACTCTGTGCTTGTCTTTTGCTGTCaacatgtactgtactgtaaacaATCTGTACTGTAGGATTACAAGTCATTGTCAACCTACGTTTTGAATgcaaacagcagggggcgctctGATCACTTTCCCTCCCATCTTCACGACAAGGTGAAAAATATACAAGTATGATTCACGACTTCGTGGAACAATAGAAGCTTACTCACAATGTGACGACTGGCGGATGAGGTGTTATTTCTGGTCCATACGTATCCTCCCGACAACAAAATAACAACCTAATGTTTGTTCTTTGTGGAATAAGAATAAGTATTTTATGATAAAACAAAAGATTCAAATAAACGAAGGAATAATGTATCTTTCTGTGTGTTGCTTTGAACTGAAATGTTTTGGTGCATGACAATGACGTACTGAATGTTCTAATGgatttattgtgattattttgaCGCTAGTGTTCAGCAAAGCCAGCAATATTgtggttttcattttttcatttttttttccttgtccCAGTTCTGTTGGGACAATAGCGTTTATTGTGATCTTgagcttttattttgtgtagttttaatAATTCTaactttatttagttatttttctattaactTAGTCTGTAAAAGATTAGGTGTTTACACTAGGCCTTATTGAGTCTTATTGAAATTTGAAATTTTGGACACCGGAGTGACTTTTTACCACTCAAAGTCCTTGACTCAGATTGCACTGACTGCTTCAGAAATGTACTTTTTGCATGAGTCTTTAGATTAACTGTCACAAAGATGTGTTGTATAAGCTGGCCTTGCAGCTAAAGAATGTGATTTTAATATTGGGGAACCTCAGTTTTTGAGGAAatctttaaagaaaataaaaaactccaTGTTAACAAAA

Function

symbol description
batf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including defense response to protozoan; immune system development; and regulation of gene expression. Predicted to act upstream of or within cell differentiation and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human BATF (basic leucine zipper ATF-like transcription factor).

NR:

description
basic leucine zipper transcriptional factor ATF-like

GO:

id name namespace
GO:0045064 T-helper 2 cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0002320 lymphoid progenitor cell differentiation biological_process
GO:0001816 cytokine production biological_process
GO:0045190 isotype switching biological_process
GO:0042832 defense response to protozoan biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0072540 T-helper 17 cell lineage commitment biological_process
GO:0030330 DNA damage response, signal transduction by p53 class mediator biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09034 BATF; ATF-like basic leucine zipper transcriptional factor

RNA

RNA id representative length rna type GC content exon number start site end site
TU33473 False 1678 TUCP 0.41 3 39309730 39324690
XM_007259867.3 True 1694 mRNA 0.41 3 39309726 39324702

Neighbor

gene id symbol gene type direction distance location
LOC103034748 LOC107708319 coding downstream 2937 39274499 ~ 39306789 (-)
LOC103044372 wdr26,LOC103044372,LOC108414895,LOC103363787 coding downstream 36444 39251044 ~ 39273282 (-)
LOC103044694 LOC103044694,LOC108414893 coding downstream 63112 39223883 ~ 39246614 (-)
LOC103046220 LOC103046220 coding downstream 106729 39199438 ~ 39202997 (-)
slc35a1 slc35a1,LOC106607707 coding downstream 117645 39173990 ~ 39192081 (-)
LOC103042954 NA coding upstream 31992 39356694 ~ 39361435 (-)
tmed10 tmed10 coding upstream 57498 39382200 ~ 39387492 (-)
zc3h14 zc3h14,LOC102797374 coding upstream 74304 39399006 ~ 39408918 (-)
rad51 rad51 coding upstream 106961 39431663 ~ 39439043 (-)
LOC103041222 NA coding upstream 116368 39441070 ~ 39453885 (-)
LOC111191798 NA non-coding downstream 100461 39207480 ~ 39209265 (-)
G24860 NA non-coding downstream 121448 39187782 ~ 39188278 (-)
G24839 cf166,LOC103047239,LOC105017858,LOC100499587 non-coding downstream 156275 39147559 ~ 39153451 (-)
G24843 NA non-coding downstream 251160 39058005 ~ 39058566 (-)
G24842 NA non-coding downstream 251825 39057567 ~ 39057901 (-)
LOC111196213 NA non-coding upstream 148122 39472824 ~ 39480344 (-)
G24911 NA non-coding upstream 174341 39499043 ~ 39499466 (-)
LOC111196215 NA non-coding upstream 189767 39514469 ~ 39524274 (-)
G24964 NA non-coding upstream 399753 39724455 ~ 39732479 (-)
G24992 NA non-coding upstream 494574 39819276 ~ 39825981 (-)
smim8 smim8 other downstream 382733 38925623 ~ 38926993 (-)
LOC103024598 LOC108411439 other downstream 386809 38887626 ~ 38922917 (-)
wisp3 wisp3 other downstream 682674 38611046 ~ 38627052 (-)
ndufaf4 ndufaf4 other downstream 1032011 38275466 ~ 38277715 (-)
ufl1 ufl1 other downstream 1046052 38246771 ~ 38263674 (-)
G24903 NA other upstream 130534 39455236 ~ 39458189 (-)
LOC111196341 NA other upstream 850560 40175262 ~ 40230868 (-)
G25265 slco5a1 other upstream 1889719 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 2111339 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 2531393 41856095 ~ 41865844 (-)

Expression


Co-expression Network