G25021


Basic Information

Item Value
gene id G25021
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39992701 ~ 39994485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33663
ctgtaattaatctgtaaaaaTGCAAACTTCACCAATAGTtgcactgttattacatgatcATTAatgagacacttattataaagtgggacacATTGTTTATTAGCTTCATTAGTCTTGTAGATCCAGTGCGAATCTAAATTGGCAAACTTCAGATACCAAACTTCCCAAATAGCATGTCTGTGTGGGGCCTGTATGAGCAGCCCAGCTGAACCCCAGAAATAGGTCCATGGGTTTCATGTTGGCCCCATATCAGTAAAGGGGACAAGAAGGGGTTTGTGCACTGAACATGAGGCCTAGATGGGACTTGTGTAAGATAAAGGTGGGCCCAGTAAAAACACATGTAGCTACAAACCCACTTAAACTCACTCAGAGCCCATTGCCCACCTGGAACCCACCTAGCCTAGCTCACGTTCCACCCATGTGAGACTCAACATGAGAATGTCGCCTGGGTTGTGCATGAATGAGTCAACAGTTTCCACCAacaattcattttaataatagtaataatttaaacatacacaATAATGTTGTTGATATTATCCTCACAATGCTGATTTCTAGGTACTTGTCTTTATTCCTtgtttagcaacattagcattgtaACTCTCCCCCTGAAGGTAAATCATCATATATGCTGGTTATCTGGCTTTGGTGGGCTAAGGGCTTAATATAGAACAAACTGTGACCTGAAGGTTTCTTGGGTTTAAATCTGGttaaattattgatttttttggaaaatattaGTTCACtgaacaaacaacacacacagatcatAACAATTCtctattaataacttaaaacataacAGAATTACCATTCCATTCATTATGACCTAGGCAACAAAGAAGGTAGAAATCTCTGGACATCACCCCAACTCTTAACCAACTCCTCCCAAGATATACATacgatgtgtttctttgatgcTTCATTCAATGCTTTATTTCAAAAGGATGCCAAAGAATATAATACCTAAATATGGACATAACCTTTACATCTTTACATtctgatataaatacacaatataaaaCAGCATTTGGTAgtaaattgtgttaaaattaACCTCCTAAGACTCCTAAGAGGTtttttgcttggtgtgcatttttaatttctcatagctatttgggattagtagggcctaaaaaaaaaaaaaaaaacagaaaacaccagTGTCCTTATATGGGGACATaagtttaatttaacatttataaatgatCCTTGCCATTTAGGATCAGAATGACCaaattagtccaaaaactacattttaggtttctacagtaagtaaataaaatagtttcaaACGTAAAATTCAATGagaatttttacctggcccGTGTTTCTGCCTGGACTAGCAAAAGAAACATTTGAATGAGATTCTGGCcgtcttgttttcaatcaattgagtgtaatgttgtcatgtgaccactagatggtactggcagtgtctccatatgaggttAAATGTCAAGGTTTGAAAAAATTATCATGGTGAAGAGAAGCAGAAAAACTTGTCAGAGCTTTATGGAACATAGCACTTTCTTTGAAATGTGCTAATATTTGCAGGATGTTAGTCCAAAAAGACACTGTGTTAAAGTTCACCATTGCTGATAAAACATATTCGGTGCCTGATGTGTGATTAGTTTATGCACAAATTAAGCTGCCTGCTAATGttaatctttctttctttcttttttttgttgctctGAGCCATACTTCATGTTTAATTATAACAGTATCAGAAAACACATCAGcaaatctcagaaaattagtgATTCATTAGCagagtgc

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050817 coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU33663 True 1785 lncRNA 0.36 1 39992701 39994485

Neighbor

gene id symbol gene type direction distance location
c3h6orf58 NA coding upstream 504 39985145 ~ 39992197 (+)
LOC103036628 NA coding upstream 295214 39694653 ~ 39697487 (+)
LOC103032515 NA coding upstream 322886 39668510 ~ 39669815 (+)
LOC103042020 LOC108432804 coding upstream 564930 39412683 ~ 39427771 (+)
LOC103043278 LOC103043278,LOC108432833 coding upstream 624408 39365807 ~ 39368293 (+)
cspp1 NA coding downstream 316456 40310941 ~ 40319844 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281 coding downstream 511931 40506416 ~ 40726249 (+)
c3h8orf34 cunh8orf34,LOC103047203,LOC106909367 coding downstream 736902 40731387 ~ 40903436 (+)
sulf1 sulf1 coding downstream 927987 40922472 ~ 41115241 (+)
slco5a1 slco5a1,LOC107741005,LOC107686683,LOC108256392,LOC107695420,LOC107584939,LOC107758302 coding downstream 1127794 41122279 ~ 41216150 (+)
G24978 NA non-coding upstream 144453 39845370 ~ 39848248 (+)
G24981 NA non-coding upstream 145441 39846809 ~ 39847260 (+)
G24837 NA non-coding upstream 339682 39648388 ~ 39653019 (+)
G24834 LOC108432800 non-coding upstream 354097 39637403 ~ 39638604 (+)
G24833 NA non-coding upstream 366008 39621853 ~ 39626693 (+)
G25024 themis non-coding downstream 9688 40004173 ~ 40013801 (+)
G25142 NA non-coding downstream 500531 40495016 ~ 40495230 (+)
G25240 NA non-coding downstream 1126811 41121296 ~ 41121553 (+)
G25243 NA non-coding downstream 1152068 41146553 ~ 41147637 (+)
G25251 NA non-coding downstream 1227633 41222118 ~ 41223485 (+)
G24972 NA other upstream 166983 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 594823 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 651730 39325083 ~ 39340971 (+)
G24719 NA other upstream 946920 39045170 ~ 39045781 (+)
G24583 NA other upstream 1045479 38939357 ~ 38947222 (+)
G25601 NA other downstream 2397155 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 2503237 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 3265135 43259620 ~ 43262099 (+)
rps29 NA other downstream 3365984 43360469 ~ 43363444 (+)
G25879 NA other downstream 3427286 43421771 ~ 43422046 (+)

Expression


Co-expression Network