Gene
RNA
| Item | Value |
|---|---|
| gene id | G25128 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 40383601 ~ 40421173 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0010646 | regulation of cell communication | biological_process |
| GO:0048583 | regulation of response to stimulus | biological_process |
| GO:0023051 | regulation of signaling | biological_process |
| GO:0009966 | regulation of signal transduction | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU33791 | True | 490 | lncRNA | 0.47 | 2 | 40383601 | 40421173 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arfgef1 | arfgef1,LOC107595140,LOC107686689 | coding | downstream | 24982 | 40319929 ~ 40358619 (-) |
| LOC111191900 | eif4g3 | coding | downstream | 74113 | 40307931 ~ 40309488 (-) |
| ptprk | ptprk,LOC106607755,LOC106571353 | coding | downstream | 270978 | 40020492 ~ 40112623 (-) |
| themis | themis | coding | downstream | 366507 | 39994584 ~ 40017094 (-) |
| LOC103039380 | LOC103039380,LOC108432811,LOC108261192 | coding | downstream | 405905 | 39975740 ~ 39977696 (-) |
| cpa6 | cpa6,LOC107695399,LOC107686690 | coding | upstream | 7812 | 40428985 ~ 40482543 (-) |
| LOC103046753 | chrm5 | coding | upstream | 830387 | 41251560 ~ 41263819 (-) |
| ryr3 | ryr3 | coding | upstream | 858694 | 41279867 ~ 41391804 (-) |
| LOC103044553 | grem1 | coding | upstream | 1007010 | 41428183 ~ 41431907 (-) |
| scg5 | scg5,LOC107756590,LOC107549096 | coding | upstream | 1010821 | 41431994 ~ 41435223 (-) |
| G24997 | NA | non-coding | downstream | 535392 | 39845373 ~ 39848209 (-) |
| G24992 | NA | non-coding | downstream | 557620 | 39819276 ~ 39825981 (-) |
| G24964 | NA | non-coding | downstream | 651122 | 39724455 ~ 39732479 (-) |
| LOC111196215 | NA | non-coding | downstream | 859327 | 39514469 ~ 39524274 (-) |
| G24911 | NA | non-coding | downstream | 884135 | 39499043 ~ 39499466 (-) |
| G25174 | NA | non-coding | upstream | 304626 | 40725799 ~ 40726362 (-) |
| G25173 | NA | non-coding | upstream | 305312 | 40726485 ~ 40728663 (-) |
| G25258 | NA | non-coding | upstream | 733094 | 41154267 ~ 41154801 (-) |
| G25255 | NA | non-coding | upstream | 800946 | 41222119 ~ 41223487 (-) |
| G25268 | katnbl1 | non-coding | upstream | 818496 | 41239669 ~ 41242371 (-) |
| LOC111196341 | NA | other | downstream | 152733 | 40175262 ~ 40230868 (-) |
| G24903 | NA | other | downstream | 925412 | 39455236 ~ 39458189 (-) |
| LOC103043888 | LOC108432835 | other | downstream | 1036685 | 39273635 ~ 39346916 (-) |
| batf | batf,LOC107697118 | other | downstream | 1058899 | 39309726 ~ 39324702 (-) |
| smim8 | smim8 | other | downstream | 1456608 | 38925623 ~ 38926993 (-) |
| G25265 | slco5a1 | other | upstream | 793248 | 41214421 ~ 41218829 (-) |
| arhgap11a | NA | other | upstream | 1014868 | 41436041 ~ 41442494 (-) |
| LOC111196508 | NA | other | upstream | 1434922 | 41856095 ~ 41865844 (-) |
| LOC111196586 | LOC108262118 | other | upstream | 1447851 | 41869024 ~ 41880424 (-) |
| G25678 | NA | other | upstream | 2296493 | 42717666 ~ 42718389 (-) |
