G25173


Basic Information

Item Value
gene id G25173
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 40726485 ~ 40728663 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33840
TTCAACTTCAACAGGGAGATTCACCCAAAATGTGACATGTTTATGATATATATCATATTGAGTCAGTTTAATCATAATAAATTAGTGCTGTTTCCATTAAAACAACGCTGCTGTTAGTATTCCTGTACAGTACGAATGGTTTAACACTTCTgacactgtgattaaacacaAAGGATAAGACACGACGTAGAGgcactgtactgtaataaactGTCTCGACCGCtgagttttattaataaacgACATTTACAGGCACGAAGACAGCTGGTACAACTCTTTTTCTGCTCGCTTCATTTGCATAGTAATCACTCGATTTACTCTGTTGTGCTAAGCAACATTAAGACATAACATCATATAGAATTACTCCTGAGTACTGAATATTTAAGCCGATTCATAATTCATAAGCGCTACATACGTGAGGCCTGTTTAGAACAGTAACACTGATGGCATCGTATTTTATTATAGACACACATTTTTCCAGCACATTATCATCCATTCACTGAGAGCGTACTGTATTTAGCTTAATGCAGGAATGAGTTAATCAGCTCTATTCAACATTTAAACACTTCTAGACGAGCTAGAGAAAACGATTACACTATACAGACTTACTTTCAGAACATAACATATGACTGTAGAAGGCAAGGCTATAAAGGCTATATAGTAAGGCTATAAAGGCTTTAAACCTGTTCATATTCTTATTTATATACTTTTCATGTACAACAACATATCAtgtacaaaaaagaaagaaaaatctaCAGAAACTCATAAAAacttacttttttgttttacattaaaaagggGAATTTAAAATTGtacacatggaaaaaaaaacacaatgcacTGAACTGACTTGATCCACTCTTTTCCACATGAATAACATATATAACCACACACATTTAACGCTATAGTACGAAATCGTGTGCACGGACTGATCCGTAACAACATGGAAACCCTTTTTGGCGCTATATAAAACCATTCAGGCACCCCATAAAACATGTACTCCCTATCTGGTTCTGTTGAGAAGAACCATTTAACTatgcaaacacacatttacGCATTCAAGTGCTATTTTGAGTTGCCACAGTTTCTATCATTATCAATCATGGAAACCTTTAAGAAGCCCATTCTAAGGCTGTATGTGGGAATCAGGTGTGAATATGTAGaaattataagatttttttacttaatttaaggTATTGTAATATGGTATTTTTGGCCATATTAGCTGCATTCCAAAGCTTAGGCTTCAGCCAAGTTGGGCTACAATTCTTGGCCTCTAAATCATAGAAGGACCTTTTTTGTATACAGCGGAGAAATGCAGCTGACATAAGAGTGTTTTGGAGGATGCAAACTATTCTCTGTACATGTGCAACGTgaagataaaaaagaagaagatagcagacaatgtatttatttttgtaaagaaattaaaattaagGTCACTATGTGTTGTTTGCAAGTGATCGTATGCATTATGGCTGCCTTACGTATCCCATGTCCTTTTGGAGCATTGGAGCATGCTACCTAGACTGCTGCCTAGGCTTTGGAATGCAGGTACAATGTGTTATTAAATACAATGTGTAATTAGTTTACACTATTTGTCCTCTAGCACTTTTCTTCAACTCGTTTTGCCATGCCAGATCAGTCTGTGACATTTCTGAATTCAAATGACGCAAAttaagtacactgtaaacccagaaatagtttgaactcaaataaattaagtctgttttacataaaattagagatttctaaacaatagtatgtttccattaacagcttcttttccattggcttctgtcacaatcgatttgcatactgggtgtgtccaacagtttctgacaaacactcaccatcagtgtgtagtgattcacccggggcttccttaggtaaacttgtagatcatatattataattaaatacttggtctctgtgttgtgggctgtagaacaagcatcatttactgagctgcagtaactctgtgttctcactgtgctctcagtacttttaatactttactgttttatttcatctacttttctatgagtatttaaaaaaatagttgaatgaaaccagaaagaagactaaaaagaagttcaggaaaat
>TU33841
CTtcaaaaacttttatttaatagtAACCAATAACTACAATTTGACATAGTACACAATTCATAATACAGAATACTTCAACTTCAACAGGGAGATTCACCCAAAATGTGACATGTTTATGATATATATCATATTGAGTCAGTTTAATCATAATAAATTAGTGCTGTTTCCATTAAAACAACGCTGCTGTTAGTATTCCTGTACAGTACGAATGGTTTAACACTTCTgacactgtgattaaacacaAAGGATAAGACACGACGTAGAGgcactgtactgtaataaactGTCTCGACCGCtgagttttattaataaacgACATTTACAGGCACGAAGACAGCTGGTACAACTCTTTTTCTGCTCGCTTCATTTGCATAGTAATCACTCGATTTACTCTGTTGTGCTAAGCAACATTAAGACATAACATCATATAGAATTACTCCTGAGTACTGAATATTTAAGCCGATTCATAATTCATAAGCGCTACATACGTGAGGCCTGTTTAGAACAGTAACACTGATGGCATCGTATTTTATTATAGACACACATTTTTCCAGCACATTATCATCCATTCACTGAGAGCGTACTGTATTTAGCTTAATGCAGGAATGAGTTAATCAGCTCTATTCAACATTTAAACACTTCTAGACGAGCTAGAGAAAACGATTACACTATACAGACTTACTTTCAGAACATAACATATGACTGTAGAAGGCAAGGCTATAAAGGCTATATAGTAAGGCTATAAAGGCTTTAAACCTGTTCATATTCTTATTTATATACTTTTCATGTACAACAACATATCAtgtacaaaaaagaaagaaaaatctaCAGAAACTCATAAAAacttacttttttgttttacattaaaaagggGAATTTAAAATTGtacacatggaaaaaaaaacacaatgcacTGAACTGACTTGATCCACTCTTTTCCACATGAATAACATATATAACCACACACATTTAACGCTATAGTACGAAATCGTGTGCACGGACTGATCCGTAACAACATGGAAACCCTTTTTGGCGCTATATAAAACCATTCAGGCACCCCATAAAACATGTACTCCCTATCTGGTTCTGTTGAGAAGAACCATTTAACTatgcaaacacacatttacGCATTCAAGTGCTATTTTGAGTTGCCACAGTTTCTATCATTATCAATCATGGAAACCTTTAAGAAGCCCATTCTAAGGCTGTATGTGGGAATCAGGTGTGAATATGTAGaaattataagatttttttacttaatttaaggTATTGTAATATGGTATTTTTGGCCATATTAGCTGCATTCCAAAGCTTAGGCTTCAGCCAAGTTGGGCTACAATTCTTGGCCTCTAAATCATAGAAGGACCTTTTTTGTATACAGCGGAGAAATGCAGCTGACATAAGAGTGTTTTGGAGGATGCAAACTATTCTCTGTACATGTGCAACGTgaagataaaaaagaagaagatagcagacaatgtatttatttttgtaaagaaattaaaattaagGTCACTATGTGTTGTTTGCAAGTGATCGTATGCATTATGGCTGCCTTACGTATCCCATGTCCTTTTGGAGCATTGGAGCATGCTACCTAGACTGCTGCCTAGGCTTTGGAATGCAGGTACAATGTGTTATTAAATACAATGTGTAATTAGTTTACACTATTTGTCCTCTAGCACTTTTCTTCAACTCGTTTTGCCATGCCAGATCAGTCTGTGACATTTCTGAATTCAAATGACGCAAAttaagtacactgtaaacccagaaatagtttgaactcaaataaattaagtctgttttacataaaattagagatttctaaacaatagtatgtttccattaacagcttcttttccattggcttctgtcacaatcgatttgcatactgggtgtgtccaacagtttctgacaaacactcaccatcagtgtgtagtgattcacccggggcttccttaggtaaacttgtagatcatatattataattaaatacttggtctctgtgttgtgggctgtagaacaagcatcatttactgagctgcagtaactctgtgttctcactgtgctctcagtacttttaatactttactgttttatttcatctacttttctatg

Function

NR:

description
PREDICTED: dnaJ homolog subfamily A member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33840 False 2106 lncRNA 0.41 1 40726485 40728590
TU33841 True 2118 lncRNA 0.35 1 40726546 40728663

Neighbor

gene id symbol gene type direction distance location
cpa6 cpa6,LOC107695399,LOC107686690 coding downstream 243942 40428985 ~ 40482543 (-)
arfgef1 arfgef1,LOC107595140,LOC107686689 coding downstream 367866 40319929 ~ 40358619 (-)
LOC111191900 eif4g3 coding downstream 416997 40307931 ~ 40309488 (-)
ptprk ptprk,LOC106607755,LOC106571353 coding downstream 613862 40020492 ~ 40112623 (-)
themis themis coding downstream 709391 39994584 ~ 40017094 (-)
LOC103046753 chrm5 coding upstream 522897 41251560 ~ 41263819 (-)
ryr3 ryr3 coding upstream 551204 41279867 ~ 41391804 (-)
LOC103044553 grem1 coding upstream 699520 41428183 ~ 41431907 (-)
scg5 scg5,LOC107756590,LOC107549096 coding upstream 703331 41431994 ~ 41435223 (-)
LOC111196450 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 715353 41444016 ~ 41446465 (-)
G25174 NA non-coding downstream 123 40725799 ~ 40726362 (-)
G25128 NA non-coding downstream 305312 40383601 ~ 40421173 (-)
G24997 NA non-coding downstream 878276 39845373 ~ 39848209 (-)
G24992 NA non-coding downstream 900504 39819276 ~ 39825981 (-)
G24964 NA non-coding downstream 994006 39724455 ~ 39732479 (-)
G25258 NA non-coding upstream 425604 41154267 ~ 41154801 (-)
G25255 NA non-coding upstream 493456 41222119 ~ 41223487 (-)
G25268 katnbl1 non-coding upstream 511006 41239669 ~ 41242371 (-)
G25272 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 non-coding upstream 516029 41244692 ~ 41249653 (-)
LOC111196423 NA non-coding upstream 673358 41402021 ~ 41402694 (-)
LOC111196341 NA other downstream 495617 40175262 ~ 40230868 (-)
G24903 NA other downstream 1268296 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 1379569 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 1401783 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 1799492 38925623 ~ 38926993 (-)
G25265 slco5a1 other upstream 485758 41214421 ~ 41218829 (-)
arhgap11a NA other upstream 707378 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 1127432 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 1140361 41869024 ~ 41880424 (-)
G25678 NA other upstream 1989003 42717666 ~ 42718389 (-)

Expression


Co-expression Network