G25243


Basic Information

Item Value
gene id G25243
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41146553 ~ 41147637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33922
AGCCAGGAATCAGTTTCACCACGATTCGCCTGGAATAATTTTGGGAGTCGATATGAAAACCGCCTGACACCCTACGAGAGGGCAAGTACTCGTCTCGGTTTGAACACTGAAGCTGCCATGGgacagagagacgaggaggacCTGAAGCTATGCTAACCGAGCCAAGCACGATTACTGCCGTCCACCGTCTCCTGGCAAAGTGGACGCTGCAGCTGCACGAATAAGGGAGCTGGAGCAAAAAGTGATTGAGCTggagaattaaataaaacagcttgCAGACCAACCTAGGCTTAACCATTTCTGCTCAACTAAAGAAGAGTTCCACTTTTTCCACACAATTTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33922 True 345 lncRNA 0.43 2 41146553 41147637

Neighbor

gene id symbol gene type direction distance location
sulf1 sulf1 coding upstream 31312 40922472 ~ 41115241 (+)
c3h8orf34 cunh8orf34,LOC103047203,LOC106909367 coding upstream 243117 40731387 ~ 40903436 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281 coding upstream 420304 40506416 ~ 40726249 (+)
cspp1 NA coding upstream 826709 40310941 ~ 40319844 (+)
c3h6orf58 NA coding upstream 1154356 39985145 ~ 39992197 (+)
katnbl1 katnbl1 coding downstream 88619 41236256 ~ 41242348 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 coding downstream 96900 41244537 ~ 41249571 (+)
aven NA coding downstream 107077 41254714 ~ 41279937 (+)
fmn1 fmn1 coding downstream 256359 41403996 ~ 41428170 (+)
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding downstream 386468 41534105 ~ 41545497 (+)
G25240 NA non-coding upstream 25000 41121296 ~ 41121553 (+)
G25142 NA non-coding upstream 651323 40495016 ~ 40495230 (+)
G25024 themis non-coding upstream 1132752 40004173 ~ 40013801 (+)
G25021 NA non-coding upstream 1152068 39992701 ~ 39994485 (+)
G24978 NA non-coding upstream 1298305 39845370 ~ 39848248 (+)
G25251 NA non-coding downstream 74481 41222118 ~ 41223485 (+)
G25287 NA non-coding downstream 145827 41293464 ~ 41296688 (+)
G25339 NA non-coding downstream 292175 41439812 ~ 41442539 (+)
G25351 NA non-coding downstream 337852 41485489 ~ 41486268 (+)
G25355 NA non-coding downstream 348229 41495866 ~ 41497739 (+)
G24972 NA other upstream 1320835 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 1748675 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 1805582 39325083 ~ 39340971 (+)
G24719 NA other upstream 2100772 39045170 ~ 39045781 (+)
G24583 NA other upstream 2199331 38939357 ~ 38947222 (+)
G25601 NA other downstream 1244003 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 1350085 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 2111983 43259620 ~ 43262099 (+)
rps29 NA other downstream 2212832 43360469 ~ 43363444 (+)
G25879 NA other downstream 2274134 43421771 ~ 43422046 (+)

Expression


Co-expression Network