G25265 (slco5a1)


Basic Information

Item Value
gene id G25265
gene name slco5a1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41214421 ~ 41218829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU33946
GAAGTAAACGACGTCTAAACACAACAAAGCAAACAAAGACAGACttgcttttttcctctttttttaatgacaaaTATCAAGTATTCAAGgtatttgtaaacaaaagcGTTCACAAATGATGTATTCACTTCTGTTCCTGAGGAACACAGAGCAGGAGCGTGACCTTTCTGATGCAGCTTGTCTTCTTTtcatttcaataaataaatgttgataaTATGCAGGTAAAAATAAGGAGAACACAAAGGTAAAAGATCTACCTGAAACGACCCACATGAGCAAATAATGACATCTCGTCGTGCGTCGAGCGCACACTGATAGCACTAAGAACAGACAGACTTTGGCCAGACGCCATTCTTCTACAGCCATTTTAATCCTGCTTTTCTTaagatattttacattttcactttTATCAATACAGCAAAAAAGAAACACCAATTTGGCTTCAGACCAGCAGCGAAGGCCGGCGTCCCGCCAcactgagagacagagatatgTATGAATACTAGCTGGAGGGCTCCTCAGCTGAGACCCAGGAACCTCCACTTTCTTTGTCACAACAGGCAAACTAATAGTGCAAGCACAGTGACCCCGAAAACCACCACTGACCACCTGCACATCTACCCTCGCTCACACAAGCAGTGGTGTGCTCAGATGGCATCAACTGTAATatagcaataaataataataatactaataattataataataataattataataattacaccTAACTAGTTTCGTAAGGTCCTTTCGGTGACACTCAAGAAGAACCCCAACAATTCAGCCAGGTCAAATAATCCCCCGACCTACCCCACCAACACCACCCCCATCCACCCACCCCTCACCCCCCAAATAACCTCAATTCAAAAGGAAACCCACGTGAATTAAAGCCAACACGTCATTTATACTGTAGGTACTTTAGGTAAGTCAGGCACAGAAAACAATCTACTCTTTGTTTTCTTGCTCAACACATTTCGTGGGTTGTCTATGTTTAATACATGGGTTAGTCTAAAAGCTTCTAGCTACTTGTAGTTATCTTTATACAGTTACAGCTACAAATAAGAGGTAATTCcacattttttcaaatttttccaaAGTTCTCCAATTATTACAATGTTAAGGTCATTTAAAGTGAGTTTGGTGTTTTAGAAAATCTTACTGAACCTTACTGAAGTGAGCCAGAACAGATCACTCGtataacagtaataaataaaaagattattaatttgtttttagaagAATTTGGCATAAAAACAAGAGATATCTGCAACAATTCACAAACAATTTTAGCCATACGCCACAAGTCACGATCAtcaccacccactgcactgtcttcTTCTATGATGTACTACTTGTAGTAACACTGTGGgtggaggaatgttaaatgttaaacacTGCGGAACTACACAAATGGAAATGTGCCATCCATCTAACACCCACTATCAGGTCTCACTCAAACTCATGAGCACATTGCCCAGTGCTGCCCATCTTCCCTCACAAGAGAACACCTCACTGCCTACGAAGGCATTATGTATGCATTCCCAAGCTATTTTTTCAGGTAACATTTGGTGATTTATTGAAATAATACTATCCCATGAATTTTGGGACCATCTTATAAAGCAGGATTATATGACTTCATTAAGTGTATTAtactaataaaatgtttattatataatgGCATGGTGTAATATAAAGGTGTTTATAAAGGTCTTCCCTAAATTGCTTTAATTACTTATGAGAAAGTTATATATGCCTTAAGCTGggcaataaaaaatgtttaagccATATAACATGTTCATTAATGCATGATTAATATAAAGTGGTATTGCATAACTATTTTGCAGATTCATGACTATTTTGCCATCAtcaactttaaatataaaattcataATACTAGTGCAGGTTCCCTCATTGTTTTAGTAAGTCAATACAATATATAGCTGTGTGTTTTATCTAGCCAAGTTTCTCTTCAGCAAATCTTCACGCCAAAACCACTCAGAATGACTCTGTTTACATGTAGAAATTGAAGATGGAAAAATATGAAATTCCCCATATTGTAGTTCATATTGTAACACTGTAACCAGACACTTTCAGCCTTCCCAGAATAGTGTATATAGTCAAACATAGAAAAATgggtttatatttgtatataatcaATGACGTGACTTACAGCACTAATACAGTGTATGTTCTAACTGGCCAAATTCTCAATTCATAAATTGTAAGTTTTAGAAGAGTGTTTATATATAGACACAGTTACTGGAAAAGGATTAAACTTATTATGTGCCTGGATGGGTCTCGTTTCCTGCATGCTGTGCTACCCATCCAAAATGCCTATTGAACTACACTACATCATGCAAAATGATGCAGCATCAGAGGATACAGGTTTAGTATTCTTCCTAGCATTTGTTATAATGAATGTTGGCTAGGTATGGAGGCATTTGAACTAACTGGCAACTTGCCTTCTTACAATGATCAGATATATGGATGAGTTCTGCCTGCCAGTGAATGCATGATGAGAGAACTGCTGAGAATTTTTTGCTCTTGTTCTTTTGCTGTTCATTTTATAGGCCACACATCTTAGAAAGAAGTAATGTTGCAACAGCAGAAGCACATGCTCCTGATATATCCTAATATagctttcaattttttttaatttagcatGAAAATACTGCTGCCAGTTTAATAATGCTGTTGCTTAAAGCATTGAGGCGTTGTTCAGGCTGATTACCAGCAGCAAGAGGGGCAACAGGAATAACTGTCATGGCTGCTGAGATCAATCCATGCTCCTTCAGGTTATCACACTGCAAAAGCAGAGACAGGTCCACCCATGCTGACCGGGACATGCCGGCATTTCATTCAGCAGCGCATTCCACCGAGCTCAGGGGTCACTGtcctgatttatttttaatttttatttttggctttGTTCTTTTCATGTTTCTTGCTTGGTGTTACAATACTTGATCAAATCCCAAAGCTGAATTTCACCACTGACCACTGGGGTTGATGACTGATGAATAATGAGGAATGGTGTTTCTGCTGTCCACCTGATCCTGCTGCTCCATGTTGGCCGGTAGGCATCACTGCTTTCAAGGGCAGCCTTAGGCACTGAAAATCAGAGAGGGGCACTGGCGCGGGAAAGTCTAGACAAGAGAAAAAGTTCCCCTCAGCTCCTGAAAGTGCCCACATGGCCCAGTGTAGGCAAGTGGAACACACCGAAGCTCTTTATTACTAAAATGACTGTGGACCGTTTTCACATCAGTGACATtaagagagacagtaagagtgACAGAGATGTCCATCACTCGAttgaaatactgaatactgattgGTTTGAAGAGATTCATGGCAACAATCCATGAAACACAGAGGGGCATAGTGGCAAATTTTGCATAGTACAGGTTTCCCAGTTGTGCTTGTGGTGCATTTTTGATAGTCAACTTGTAGTCATATCCAAGACATAATACACAAGAGATACAATAAGACCCTCCCAACCCTCATTTAGCACCATGTGAGGTCTTATACAATGTATAAGTCAGTGTAGGTTTGCTAACTTATTATATGCACTGATGatgtcacttaaaaaaaaataaacaaacaaaaaacccCAGCAAAAATGGATGCAGCCAGGTGCCTGCTGGAAAAAGCTGCGTTTTGAGTGGGGGGGCAAGTTAGTCCAGTATGGGAAAGGGACACAGGACAGGAAGGCACATGGAGTCGGGGCAGGGGCGAGGCTAGAAATGCTTGACCCCCGAGAATTGCTAACACTAGACACCCCTTACACACCCCAGCTCACTCTATAAACCCTGGCCTGGCACATTCCTGggctgctttattttattttattttatttattttttttatttaattgtatatatatttttaccccTTTGTCATGTTACAACGCCAGCCCTCAAACACGTACGTGGAGATCCTGCGGGGTAGAAGGAGCCGGGGGCATTATTGCTTTAAGAGCGTTTCCTGGGCAGCTCTGGCTGCTCTGGCCACGGCTGAGTGGCGGGGGCTGAGATGGCTCCAGCATCTCGGGCTTCGGTGTGAAGATGGGGCAGGAGCGAGTGCGAGCGTGGCTTTTGTGACCGCCAGCGTGACACACCATCTCACTAATGGTACCCAGCGGCGGCAGGTTCTGCCTCCAGTGTTCCAGACGCTCCTCTTTGCATTTGATGGAGTACCAGGTGAGGAAGATGAAGATAAAGCCCACAAACTTCAGGCTGGCGGCCAAGCCGAAGTAGACGAAGCGGAAGGAGGTGACGTCATACTCCCAGCACGAGCCATGCACGCCGCAGTCCTGCTGCCACAGCATGCAGGTGGTGTCGATCACTGCGCCAAAGTAGATGGGTGT

Function

symbol description
slco5a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Located in intracellular membrane-bounded organelle and plasma membrane.

NR:

description
PREDICTED: solute carrier organic anion transporter family member 5A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33946 True 4366 TUCP 0.41 2 41214421 41218829

Neighbor

gene id symbol gene type direction distance location
cpa6 cpa6,LOC107695399,LOC107686690 coding downstream 731878 40428985 ~ 40482543 (-)
arfgef1 arfgef1,LOC107595140,LOC107686689 coding downstream 855802 40319929 ~ 40358619 (-)
LOC111191900 eif4g3 coding downstream 904933 40307931 ~ 40309488 (-)
ptprk ptprk,LOC106607755,LOC106571353 coding downstream 1101798 40020492 ~ 40112623 (-)
themis themis coding downstream 1197327 39994584 ~ 40017094 (-)
LOC103046753 chrm5 coding upstream 32731 41251560 ~ 41263819 (-)
ryr3 ryr3 coding upstream 61038 41279867 ~ 41391804 (-)
LOC103044553 grem1 coding upstream 209354 41428183 ~ 41431907 (-)
scg5 scg5,LOC107756590,LOC107549096 coding upstream 213165 41431994 ~ 41435223 (-)
LOC111196450 actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 225187 41444016 ~ 41446465 (-)
G25258 NA non-coding downstream 59620 41154267 ~ 41154801 (-)
G25173 NA non-coding downstream 485758 40726485 ~ 40728663 (-)
G25174 NA non-coding downstream 488059 40725799 ~ 40726362 (-)
G25128 NA non-coding downstream 793248 40383601 ~ 40421173 (-)
G24997 NA non-coding downstream 1366212 39845373 ~ 39848209 (-)
G25255 NA non-coding upstream 3290 41222119 ~ 41223487 (-)
G25268 katnbl1 non-coding upstream 20840 41239669 ~ 41242371 (-)
G25272 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 non-coding upstream 25863 41244692 ~ 41249653 (-)
LOC111196423 NA non-coding upstream 183192 41402021 ~ 41402694 (-)
G25381 NA non-coding upstream 185181 41404010 ~ 41406787 (-)
LOC111196341 NA other downstream 983553 40175262 ~ 40230868 (-)
G24903 NA other downstream 1756232 39455236 ~ 39458189 (-)
LOC103043888 LOC108432835 other downstream 1867505 39273635 ~ 39346916 (-)
batf batf,LOC107697118 other downstream 1889719 39309726 ~ 39324702 (-)
smim8 smim8 other downstream 2287428 38925623 ~ 38926993 (-)
arhgap11a NA other upstream 217212 41436041 ~ 41442494 (-)
LOC111196508 NA other upstream 637266 41856095 ~ 41865844 (-)
LOC111196586 LOC108262118 other upstream 650195 41869024 ~ 41880424 (-)
G25678 NA other upstream 1498837 42717666 ~ 42718389 (-)
G25785 NA other upstream 1879993 43098822 ~ 43111401 (-)

Expression


Co-expression Network