G25339


Basic Information

Item Value
gene id G25339
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41439812 ~ 41442539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34038
CTCAGAGAGACTTGCTTcagaaaactgaagaaaaagcGGAGAGTAGACAAGTTCGTCTCAGGCACAAGGCAGGACACAAGCAGGGTGGCTGCACTCCGTTCTTCATCAGTGGCCAGACGCTGCGCTTTTGTGAAAGCCTGCAGTAAAACTGCAGGGAAAACTGGAGACGGAAGCTCATAGAAGAACTGCTTGACCAGGTTGGCCGCATCACACGGCAGGGAGGTGGATAAGCAGTCTTCCCCTTTGTCAAGTCTTGCTCTTAAGGCCTTCAGACGCACAACAGAGCCAGATTTCCTAAACAAGCCCTCAGAACCAGCATGTTTCAACAGAAGCTTACAACAGTTTACTAAAAAACATGGAACCAACCCATAATGATCTACGTTCCTCATCTGCAGATGCTGAAGGGGCACACCAAACAGCTTACTCTGAGGGCATGTTGGTGCACGGCTGCTCTCAGTCCTCTCTAAACTCGTCAGTTTCAGGTGAATTCCGTGCTCTGAACGAAGCTGTCTCAACACAGCACCTCTCAACACCTTCCTGTCGTCCGGCTTCATGTTTCGTACTCTTTATTTAGCTCTAAGTCttatagaaaatgaatgaaacactCCTACACGGAGAGTTTACCATGTTTCTCTCGCGTATTACCTCATCCTAAACCTGCTCGAACTAGCGTAGCTCCTAGCTGACCAGCTAATTAACGAAGCGTTAACGTGATAATGAGGGCGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34038 True 728 lncRNA 0.40 4 41439812 41442539

Neighbor

gene id symbol gene type direction distance location
fmn1 fmn1 coding upstream 11642 41403996 ~ 41428170 (+)
aven NA coding upstream 159875 41254714 ~ 41279937 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 coding upstream 190241 41244537 ~ 41249571 (+)
katnbl1 katnbl1 coding upstream 197464 41236256 ~ 41242348 (+)
slco5a1 slco5a1,LOC107741005,LOC107686683,LOC108256392,LOC107695420,LOC107584939,LOC107758302 coding upstream 223662 41122279 ~ 41216150 (+)
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding downstream 91566 41534105 ~ 41545497 (+)
LOC103041996 LOC108410928 coding downstream 105435 41547974 ~ 41567160 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding downstream 146213 41588752 ~ 41621272 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding downstream 192416 41634955 ~ 41705390 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding downstream 266231 41708770 ~ 41733546 (+)
G25287 NA non-coding upstream 143124 41293464 ~ 41296688 (+)
G25251 NA non-coding upstream 216327 41222118 ~ 41223485 (+)
G25243 NA non-coding upstream 292175 41146553 ~ 41147637 (+)
G25240 NA non-coding upstream 318259 41121296 ~ 41121553 (+)
G25142 NA non-coding upstream 944582 40495016 ~ 40495230 (+)
G25351 NA non-coding downstream 42950 41485489 ~ 41486268 (+)
G25355 NA non-coding downstream 53327 41495866 ~ 41497739 (+)
LOC111196462 NA non-coding downstream 65449 41507988 ~ 41519295 (+)
G25407 NA non-coding downstream 133744 41576283 ~ 41577638 (+)
G25426 NA non-coding downstream 145560 41588099 ~ 41588458 (+)
G24972 NA other upstream 1614094 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 2041934 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 2098841 39325083 ~ 39340971 (+)
G24719 NA other upstream 2394031 39045170 ~ 39045781 (+)
G24583 NA other upstream 2492590 38939357 ~ 38947222 (+)
G25601 NA other downstream 949101 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 1055183 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 1817081 43259620 ~ 43262099 (+)
rps29 NA other downstream 1917930 43360469 ~ 43363444 (+)
G25879 NA other downstream 1979232 43421771 ~ 43422046 (+)

Expression


Co-expression Network