G25355


Basic Information

Item Value
gene id G25355
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41495866 ~ 41497739 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34066
CTGAGGCTGACATAGgctctgtctgatctgatgCTTCACTTAGAAATGCAGACTCCGGCTCACTCTCAGAGGATAGGTACACTGTATTTGTAAAACTGTTCACTGGTGATCTTGTGTAAGCCTGCCTGGTTATCTGAAGGTATCGCTTCCAGAAATCCCAGAGCACATCTGtCTTAAACTGTGGGCACACACCCAGACCAACCAAAGCTTCTGCCTGAAGTTTTAGGATGAACTGAAATCCTTCACATACCATCCACTCTCGTCCACCTTCTCTTCTCGTTTTCTTGCGTGAGCTTGATGATATGGaggatattttattgtttagaaTAAATGAGGATACATCCACAACATCTTGTGTTTTCTCGATCACATTGTGGCAGTTCCTGCAGAAGAACTGACACCCATCTGAGAGCGCCCAGGACACAGCTCCACACTGCTTACAGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU34066 True 445 lncRNA 0.48 5 41495866 41497739

Neighbor

gene id symbol gene type direction distance location
fmn1 fmn1 coding upstream 67696 41403996 ~ 41428170 (+)
aven NA coding upstream 215929 41254714 ~ 41279937 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107756596,LOC107721381,LOC107601948 coding upstream 246295 41244537 ~ 41249571 (+)
katnbl1 katnbl1 coding upstream 253518 41236256 ~ 41242348 (+)
slco5a1 slco5a1,LOC107741005,LOC107686683,LOC108256392,LOC107695420,LOC107584939,LOC107758302 coding upstream 279716 41122279 ~ 41216150 (+)
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding downstream 36366 41534105 ~ 41545497 (+)
LOC103041996 LOC108410928 coding downstream 50235 41547974 ~ 41567160 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding downstream 91013 41588752 ~ 41621272 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding downstream 137216 41634955 ~ 41705390 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding downstream 211031 41708770 ~ 41733546 (+)
G25351 NA non-coding upstream 9598 41485489 ~ 41486268 (+)
G25339 NA non-coding upstream 53327 41439812 ~ 41442539 (+)
G25287 NA non-coding upstream 199178 41293464 ~ 41296688 (+)
G25251 NA non-coding upstream 272381 41222118 ~ 41223485 (+)
G25243 NA non-coding upstream 348229 41146553 ~ 41147637 (+)
LOC111196462 NA non-coding downstream 10249 41507988 ~ 41519295 (+)
G25407 NA non-coding downstream 78544 41576283 ~ 41577638 (+)
G25426 NA non-coding downstream 90360 41588099 ~ 41588458 (+)
G25428 NA non-coding downstream 127042 41624781 ~ 41632161 (+)
G25458 NA non-coding downstream 236264 41734003 ~ 41734204 (+)
G24972 NA other upstream 1670148 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 2097988 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 2154895 39325083 ~ 39340971 (+)
G24719 NA other upstream 2450085 39045170 ~ 39045781 (+)
G24583 NA other upstream 2548644 38939357 ~ 38947222 (+)
G25601 NA other downstream 893901 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 999983 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 1761881 43259620 ~ 43262099 (+)
rps29 NA other downstream 1862730 43360469 ~ 43363444 (+)
G25879 NA other downstream 1924032 43421771 ~ 43422046 (+)

Expression


Co-expression Network