G25459


Basic Information

Item Value
gene id G25459
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41734587 ~ 41735710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34202
AGCCTTCAtatcatttatttcatataaaaaagtgcaattttacattacttttataaaattattttatagcaTTACAAAGGTCACATTCCAGCAGAAAGAAAATTCACTTTACAGCACTCGCAGCGCAAGATGAACTGCTTTAAAGCTGTTCATCCGTGCACTCCATTCAGTTCAGATTTCTCAGGCCTGGTGCTGCAGACATCCTGCGTTTGAGAGCtttccctgctttaacacacctgACTCAACCCACCAGCTCCTAGATAAACCTTTCGTCAGGGTTAACTGGGTGCGTTGGAGCACTGAAAACACTAGAATGTGCTGGGACTGAGGGACTCCAGAAGTTGCACTCCCTGAAGGCCATCACTCTGGGCAGCTCACTGTGTCCCTGCTTGAAGGGCTGCACCAGTATAAGTGCTCTCACCACACCTGGGCTGTAGTGTAATCACACACTGTACAAGTTTaaccaaaaaggaaaaaaaggcattaaaatgtattctttttcttcattttgctTTGCCTCGTCTCAGTCTGTCCTGTTAAGAAATCTTCCTTTGGAAGAAGGAACTGTACAGCCtgtagataaatataaaaatcacacagAACTTTTTTCATCTCCGTTTGAGGGAAATCCATGTCATTTAAGACGAAGTCCAGGCAACGGACACAgaggaataacaaaaaaggtccTGTTTTTGCTCCGTGACCGAAACAcCAGTTTAGCTTCAGCGAGGAATTGTCACATGGTCATCTGAGGTCATTTCTGTCAGACAGCT

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU34202 True 773 lncRNA 0.41 2 41734587 41735710

Neighbor

gene id symbol gene type direction distance location
kidins220 LOC103040274,LOC108410983,LOC108258057 coding upstream 1041 41708770 ~ 41733546 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding upstream 29197 41634955 ~ 41705390 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding upstream 113315 41588752 ~ 41621272 (+)
LOC103041996 LOC108410928 coding upstream 167427 41547974 ~ 41567160 (+)
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding upstream 189090 41534105 ~ 41545497 (+)
rnaseh1 LOC107693208 coding downstream 581813 42317523 ~ 42326404 (+)
LOC103042546 LOC108411077 coding downstream 668210 42403920 ~ 42496318 (+)
LOC103034213 NA coding downstream 781022 42516732 ~ 42524073 (+)
acbd3 acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205 coding downstream 803632 42539342 ~ 42551073 (+)
LOC103035072 NA coding downstream 820171 42555881 ~ 42716312 (+)
G25458 NA non-coding upstream 383 41734003 ~ 41734204 (+)
G25428 NA non-coding upstream 102426 41624781 ~ 41632161 (+)
G25426 NA non-coding upstream 146129 41588099 ~ 41588458 (+)
G25407 NA non-coding upstream 156949 41576283 ~ 41577638 (+)
LOC111196462 NA non-coding upstream 215292 41507988 ~ 41519295 (+)
G25493 LOC108262118 non-coding downstream 120249 41855959 ~ 41870007 (+)
G25492 NA non-coding downstream 129541 41865251 ~ 41865609 (+)
LOC111196599 NA non-coding downstream 294370 42030080 ~ 42051485 (+)
LOC111196607 NA non-coding downstream 326214 42061924 ~ 42115521 (+)
G25560 NA non-coding downstream 460673 42196383 ~ 42196653 (+)
G24972 NA other upstream 1908869 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 2336709 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 2393616 39325083 ~ 39340971 (+)
G24719 NA other upstream 2688806 39045170 ~ 39045781 (+)
G24583 NA other upstream 2787365 38939357 ~ 38947222 (+)
G25601 NA other downstream 655930 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 762012 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 1523910 43259620 ~ 43262099 (+)
rps29 NA other downstream 1624759 43360469 ~ 43363444 (+)
G25879 NA other downstream 1686061 43421771 ~ 43422046 (+)

Expression


Co-expression Network