G25493 (LOC108262118)


Basic Information

Item Value
gene id G25493
gene name LOC108262118
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41855959 ~ 41870007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34246
atccaCCATGAAGATAAGTCACAGTTTCTTTTAACTACACATACAAACaacttttttgtgtttctcaTGCTTTTACAGAGTATATAAAACTAGTTTTAATCCTGATTACAGAAACTCTGATTAAGTGTGGGAATATTGTGGGTTCCCTGTGAACTACAGCAAGGCCGGTGAGCGATGGACCAAACAAAGACGGTTTGTCTGCCCTGTGAGGCGGGTGTAGGGTATGTTTGTGGAAATGCATCTAAGGATGCACCTACTACTCTACTGATCACAGCAGTtccaattacaaaataaaagtcctgttcTCTGGAGTATGCACTCGTGAGCCGAACTTACCAAGTTCGTTCTGACAAAGTACAAGAGTCCAAACTTGCTTAATCTATAATGAGAAACGGGCCGACTCTGGCGCTGCCAGGAACTTGTGAGCCCATGGGACCACAAGGGTGGTTGAGAAAACCTTTATTCTCTCtgtaatgattaatttatttatctaaaaCAGTATGAAATGCATTAATTAACTGAAACATGTTGCTCAGTgtgcttttaaaaatgaaaaaaaaaagaagacacatTCTTTATaggtgtgaaaaaaaatcacactttattatcataatataGAAAACCATAATAATGTATGCTGCACagacatatatagatatatttttgaTTAAGGTGAAAAGCAAATATAAtttgcatgtttaccatgtgtCCACAATAAATCGTACGTATTAAAATATCCAAACCTGTTGTAATGTGTGGGCTCTCTTCAGCAGGTATGATATCATCATAGACCTCGCCATAGTTttctgtaaaaattaaaaaatgcattgcAGCACAGCAGCATCAGGATGATGGCAGCAAGACACTGTTACTCAAAGactcaaacttttaaaatactaaGGGGTTTTCAATGTATTGGTACTGTCGCCCTCTGCGATCAGAACTGGTTGACAAATCAAAGTGtgtccctttaaaaaaaaaaaaaaaaaactcccacacaccaaaggatattaactcacctcaacatgccttttgcaatccTGTAGTTACCCCTGGGCAAtcctaaaatcactattacaaactgtacagtagGCAAGACATTGTTTTTAACTTGtgccagacatggatatactggAGTAGTCAAAGATAAATTgaatttagcattagcattacccgctaaccacgctcACTATTTTCCCGTTCAGGGGTGAGTCTTATCGGCCTGAAGCCTGATGCTAACTGCTAAAACACTTCAGAACCCTACACATATTGCATGGAACTTTTttctataaaacaaaatatatatatatatgttttttcttctgcATTAAAAATTCTAACACACATTCAGTATATGTCAACTTACCTGAGAGAAGCTCCTCATCTACGTCCTCATATCCTGAATGCTGATCTTCAGAGATAAAACTTCCTGTTAGTGACACATTTATGGTTAATCTCTTCATAGACTGCCTCAAGCAGAGTCTTCCTCCTCGCCTTAGAAATcactgtgagagagaaagaaagaaacatggAGTCAGTTCAGTAGAAGAGAAGACTGATGACAGATTGAAGGACTAATGATGATTATAGAAAGTACAGAAAGTGGATTTTAGATGATCTCTAAATCTCCCTACCTCTCCTGAGCACTCTGTTCTGATAAAACAGCACAACCAGAAGCACTAAGGCCAGGAAGAGCACAGATCCCAGAACCAGGAGAGACACTGGATAGATGTATGGAAAATTAGATGATGGATTTTTTGAAGGAGGGactgtctttttctctgttagctgtgctggtactgaaaacacagaataaaaacactgttgaaCACTGCATAGTGttgtttaaacttaaaaaaaaaaaaatcacacaaaggAACTAATTAAAAGAGTACCTGTGGTGTAAGTTGTAGTTGTTTCAGATGAAAAAGGTAATGTGACAAATATGTCTGAAAGAAATATCATAAAAATGGTCAAGAAAAAGAGGTtacagaaggagaaAGTTGTATTTGTGTGAAGAGGTTATTGGACAGAGAGTAATCTCAGATTCATCTCCTCTACACTGAAGCTCCTctgaccacacctgaccctTCCCTTTACCAAAAGCAGCTGCTCCCAGAACctccacaggagaaccacagcccagctctcgacacacaacctctgcatcctgctggtcaaagtcagcatcacacactgtgaaCCAAGACGCTCCATGAaaaacctccactctcccagagcAAACATGAGGACCATCAGCAAGTCTGGATGTCCTGTGATCTGTGTGTAATGCAAAAAtgtcaaatctctctctctctcacaatcaGATTAAATAAAGACTTGTATAATAGACAAatgctaaacaaaacagaaggCTAGTAATGAGATGAAAAAATACTAGAGTTGTCAAATTAACATGTTCACTtcattaatgaataaaaaaaatgaacacaaataacaaaaatactgCTCATTAATTACCCTACTTTGTGCCCTCTGACCTCCGACGCTAGATCCCAGttcacatatcatatcaaaccacATAATCTATCCAATTCATCCATGTTAATAATACAGATTAATTTAGCTAGGAAAACAGTTGGCATCGCCAAATAGCCATAGTGGCTAATCCGCCATTTTGAAAATCATAACAAAAGATTtatagaaaaacaataaatgttttttttttt
>TU34247
AATCAGACTGAATctcaaaattaatacataagccATTTAGCTCTTACCAGCACACACCAGTCCCACATCATTATCATGGGAgcagttgtgtttgagtgaagatgattttgGACAGAAGTGAATCTGTGATTCGCTGCCTCTACACTGAAGCTCCTCTAaccacacctgaccctcccctctaccaaaagcagctgctcccagaacctccacaggagaaccacagcccagctctcgacacacaacctctgcatcctgctggtcaaagtcagcatcacacactgtgacccagctctctccatgaagaacctccactctcccagcacagcggctcccaccatccaccaacctcacactgtctgtgtggagaaaaaaacaaacacactgatAATCAGAGAATAATTACactcaaataataatactcaaaCAAGgctgaaatacatttaaaccaAATCATGGACATCAAAAGCTCCCATTTAGAGATCATAAGAAATCAGTTCACTAATTTGTACTTCTATAGCAATACTAAAATGGGCTGACTGGATGATAGCAAAGTGTAAATCACATGAATGTAAGatcaaaaagtaaatatatacttTTCAATTAAATGCCACTTTATGCAACATCATTCAGCATGTCTGGTTTGGTGGGGgatcagtgatggtctggggagGCCTGTAGATGCCCAGGCCTCTACAGGTTAGACAACAGTACCCTGCCTGCTCTTAGGTATTGAGATGAAATCCTTGAACCCATTGTAAGACCCTACGCTGGCGCAGTGAGTCCGTGGTTTCTCACGGTGCATGACAATCCCCGGCCCGATGTGGAGAAAGTAGTTAAGTTCTTCGAGGATAAAGGAATTTATACCATTCACTGCCTTTCCAACAACATCCTAACAGAAAAAGAGGCCAGTATACATACAGTCCACAAAGTTAGTTTAAATATGCTGTATAGAAAAATGAGTAGAACTCGGATGTCCATCTCttgcacacacactgctcaactCAGCAGCAGAACAAGCTTTACCTCTACTCAGCCAGATAAGACTCAAGAacctgagagacagagagagagagagagagagagagagagagagagattccccACAGCCGCCAATCACACTCACTATGACCTTATTAGAAAGAGGAGAGGAAATTATCAAACATTTTCAGTGACAAATcagaagaagctttttttttcatttcgccatatttttaaaaagcgtCAGCACTAATTAACACAGCTCCACCtccttgtgtctgtgtgtgtgtgtgtgtgtgtctatgggCAAAGGAAGGTACAAAGTCAGCTACCTTCTGGAGACAAACTTCAGAGAgagtaaacacacaaaatacagcATTAAAGCTGCACCTGCAGACAGCAGATCCAAACACATAACATCCACCATGAAGATAAGTCACTTACCAAGTTCGTTCTGACAAAGTACAAGAGTCCAAACTTGCTTAATCTATAATGAGAAACGGGCCGACTCTGGCGCTGCCAGGAACTTGTGAGCCCATGGGACCACAAGGGTGGTTGAGAAAACCTTTATTCTCTCtgtaatgattaatttatttatctaaaaCAGTATGAAATGCATTAATTAACTGAAACATGTTGCTCAGTgtgcttttaaaaatgaaaaaaaaaagaagacacatTCTTTATaggtgtgaaaaaaaatcacactttattatcataatataGAAAACCATAATAATGTATGCTGCACagacatatatagatatatttttgaTTAAGGTGAAAAGCAAATATAAtttgcatgtttaccatgtgtCCACAATAAATCGTACGTATTAAAATATCCAAACCTGTTGTAATGTGTGGGCTCTCTTCAGCAGGTATGATATCATCATAGACCTCGCCATAGTTttctgtaaaaattaaaaaatgcattgcAGCACAGCAGCATCAGGATGATGGCAGCAAGACACTGTTACTCAAAGactcaaacttttaaaatactaaGGGGTTTTCAATGTATTGGTACTGTCGCCCTCTGCGATCAGAACTGGTTGACAAATCAAAGTGtgtccctttaaaaaaaaaaaaaaaaaactcccacacaccaaaggatattaactcacctcaacatgccttttgcaatccTGTAGTTACCCCTGGGCAAtcctaaaatcactattacaaactgtacagtagGCAAGACATTGTTTTTAACTTGtgccagacatggatatactggAGTAGTCAAAGATAAATTgaatttagcattagcattacccgctaaccacgctcACTATTTTCCCGTTCAGGGGTGAGTCTTATCGGCCTGAAGCCTGATGCTAACTGCTAAAACACTTCAGAACCCTACACATATTGCATGGAACTTTTttctataaaacaaaatatatatatatatgttttttcttctgcATTAAAAATTCTAACACACATTCAGTATATGTCAACTTACCTGAGAGAAGCTCCTCATCTACGTCCTCATATCCTGAATGCTGATCTTCAGAGATAAAACTTCCTGTTAGTGACACATTTATGGTTAATCTCTTCATAGACTGCCTCAAGCAGAGTCTTCCTCCTCGCCTTAGAAATcactgtgagagagaaagaaagaaacatggAGTCAGTTCAGTAGAAGAGAAGACTGATGACAGATTGAAGGACTAATGATGATTATAGAAAGTACAGAAAGTGGATTTTAGATGATCTCTAAATCTCCCTACCTCTCCTGAGCACTCTGTTCTGATAAAACAGCACAACCAGAAGCACTAAGGCCAGGAAGAGCACAGATCCCAGAACCAGGAGAGACACTGGATAGATGTATGGAAAATTAGATGATGGATTTTTTGAAGGAGGGactgtctttttctctgttagctgtgctggtactgaaaacacagaataaaaacactgttgaaCACTGCATAGTGttgtttaaacttaaaaaaaaaaaaatcacacaaaggAACTAATTAAAAGAGTACCTGTGGTGTAAGTTGTAGTTGTTTCAGATGAAAAAGGTAATGTGACAAATATGTCTGAAAGAAATATCATAAAAATGGTCAAGAAAAAGAGGTtacagaaggagaaAGTTGTATTTGTGTGAAGAGGTTATTGGACAGAGAGTAATCTCAGATTCATCTCCTCTACACTGAAGCTCCTctgaccacacctgaccctTCCCTTTACCAAAAGCAGCTGCTCCCAGAACctccacaggagaaccacagcccagctctcgacacacaacctctgcatcctgctggtcaaagtcagcatcacacactgtgaaCCAAGACGCTCCATGAaaaacctccactctcccagagcAAACATGAGGACCATCAGCAAGTCTGGATGTCCTGTGATCTGTGTGTAATGCAAAAAtgtcaaatctctctctctctcacaatcaGATTAAATAAAGACTTGTATAATAGACAAatgctaaacaaaacagaaggCTAGTAATGAGATGAAAAAATACTAGAGTTGTCAAATTAACATGTTCACTtcattaatgaataaaaaaaatgaacacaaataacaaaaatactgCTCATTAATTACCCTACTTTGTGCCCTCTGACCTCCGACGCTAGATCCCAGttcacatatcatatcaaaccacATAATCTATCCAATTCATCCATGTTAATAATACAGATTAATTTAGCTAGGAAAACAGTTGGCATCGCCAAATAGCCATAGTGGCTAATCCGCCATTTTGAAAATCATAACAAAAGATTtatagaaaaacaataaatgttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34246 False 2690 lncRNA 0.37 3 41860651 41870007
TU34247 True 3776 lncRNA 0.12 5 41855959 41870007

Neighbor

gene id symbol gene type direction distance location
kidins220 LOC103040274,LOC108410983,LOC108258057 coding upstream 122413 41708770 ~ 41733546 (+)
LOC103039741 mboat2b,LOC103039741,LOC108410960,LOC108257786,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding upstream 150569 41634955 ~ 41705390 (+)
LOC103038512 asap2,LOC108410950,LOC108257785,LOC105894440 coding upstream 234687 41588752 ~ 41621272 (+)
LOC103041996 LOC108410928 coding upstream 288799 41547974 ~ 41567160 (+)
ywhaq ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding upstream 310462 41534105 ~ 41545497 (+)
rnaseh1 LOC107693208 coding downstream 447516 42317523 ~ 42326404 (+)
LOC103042546 LOC108411077 coding downstream 533913 42403920 ~ 42496318 (+)
LOC103034213 NA coding downstream 646725 42516732 ~ 42524073 (+)
acbd3 acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205 coding downstream 669335 42539342 ~ 42551073 (+)
LOC103035072 NA coding downstream 685874 42555881 ~ 42716312 (+)
G25459 NA non-coding upstream 120249 41734587 ~ 41735710 (+)
G25458 NA non-coding upstream 121755 41734003 ~ 41734204 (+)
G25428 NA non-coding upstream 223798 41624781 ~ 41632161 (+)
G25426 NA non-coding upstream 267501 41588099 ~ 41588458 (+)
G25407 NA non-coding upstream 278321 41576283 ~ 41577638 (+)
LOC111196599 NA non-coding downstream 160073 42030080 ~ 42051485 (+)
LOC111196607 NA non-coding downstream 191917 42061924 ~ 42115521 (+)
G25560 NA non-coding downstream 326376 42196383 ~ 42196653 (+)
G25577 NA non-coding downstream 450904 42320911 ~ 42322260 (+)
G25602 NA non-coding downstream 526995 42397002 ~ 42397298 (+)
G24972 NA other upstream 2030241 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 2458081 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 2514988 39325083 ~ 39340971 (+)
G24719 NA other upstream 2810178 39045170 ~ 39045781 (+)
G24583 NA other upstream 2908737 38939357 ~ 38947222 (+)
G25601 NA other downstream 521633 42391640 ~ 42392938 (+)
fgfr1op NA other downstream 627715 42497722 ~ 42516642 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 1389613 43259620 ~ 43262099 (+)
rps29 NA other downstream 1490462 43360469 ~ 43363444 (+)
G25879 NA other downstream 1551764 43421771 ~ 43422046 (+)

Expression


Co-expression Network