LOC111196586 (LOC108262118)



Basic Information


Item Value
gene id LOC111196586
gene name LOC108262118
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41869024 ~ 41880424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU34294
tttttttttggtaagtgGATCATTTCTCTCCATCAGTTCATTAGTATTCATACTGTAGATCCATGCGGTTCTTGACTCACTTTCCAACTCGCGTTTTAGGTTTCCAAACCAAAGATTtatttctttacaaaataatacacaagaaaactgaacaaaaaacgATTAAAATGCTTATAAACAGAAAACTAGGTACTTATATTCATGTTCCTAATTCCTAAATCCTAAAACTGCGGTCAGAAAAGGTGAGGCTCCTTTGGCTTTTTACtgcttgtcttgtttttttctcctgcccaaaaaacactgtaattatcCGAATCTAACCTGCTACAGGTGCCTAGTGGTAACACACATTTCTAATGCCGTTACTGTTATACTAATACTGTCCCTTACACATACTTCGTTCTTCTCCATAATTTTAGTATTTACGTTAGGTTTTGAACCTAGCCTTAGGTACTTAACgatagttaactaggttagccaACTCAGGTTAGCTAAGTAAAGTAACTAAACTtgtttgtgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttattgtttttctataAATCTTTTGTTATGATTTTCAAAATGGCGGATTAGCCACTATGGCTATTTGGCGATGCCAACTGTTTTCCTAGCTAAATTAATCTGTATTATTAACATGGATGAATTGGATAGATTATgtggtttgatatgatatgtgaaCTGGGATCTAGCGTCGGAGGTCAGAGGGCACAAAGTAGGGTAATTAATGAGcagtatttttgttatttgtgttcattttttttattcattaatgaAGTGAACATGTTAATTTGACAACTCTAGTATTTTTTCATCTCATTACTAGccttctgttttgtttagcatTTGTCTATTATACAAGTCTTTATTTAATCtgattgtgagagagagagagatttgacaTTTTTGCATTACACACAGATCACAGGACATCCAGACTTGCTGATGGTCCTCATGTTTgctctgggagagtggaggttttTCATGGAGCGTCTTGGttcacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAAAGGGAagggtcaggtgtggtcagAGGAGCTTCAGTGTAGAGGAGATGAATCTGAGATTACTCTCTGTCCAATAACCTCTTCACACAAATACAACTGCTCTCATGGTAATGATGTGGGACTTGTATGTTCTGGTACAGTATAATATGTGATATTATCGTCTAACatttctttatataatatacagtataggaGAGAACTTGCTCTTTTACGAGTCTCTTGGTTGTAAATTCAGGTCATACTCAGGCTCGGCTGATGAACGGCTCAGATTCCTGTTCTGGTCGAGTGGAgctcctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata
>XM_022685901.1
tcagaggagcttcagtgtagaggaaacaaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCAGACAGTGTGAGGTTGGCGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggccacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggagaGCCGTTTAGGACTGATGCAGCTGTTCCAGGATCTGCACCGATCTGGATGAGTCATGTGAAGTGTACTGGATCAGAGTCTACACTGAAACACTGTGGATCATTAGGGTGGGGTGAACACAGCTGTAATCATAATATGGATATtgagcttacctgttcagATCACAGGACATCCAGACTTGCTGATGGTCCTCATGTTTgctctgggagagtggaggttttTCATGGAGCGTCTTGGttcacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAAAGGGAagggtcaggtgtggtcagAGGAGCTTCAGTGTAGAGGAGATGAATCTGAGATTACTCTCTGTCCAATAACCTCTTCACACAAATACAACTGCTCTCATGGTAATGATGTGGGACTTGTATGTTCTGGTACAGTATAATATGTGATATTATCGTCTAACatttctttatataatatacagtataggaGAGAACTTGCTCTTTTACGAGTCTCTTGGTTGTAAATTCAGGTCATACTCAGGCTCGGCTGATGAACGGCTCAGATTCCTGTTCTGGTCGAGTGGA

Function


NR:

description
PREDICTED: putative DMBT1-like protein

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU34294 True 3518 lncRNA 0.15 2 41869024 41880424
XM_022685901.1 False 883 mRNA 0.47 3 41869127 41874542

Neighbor


gene id symbol gene type direction distance location
LOC103041202 NA coding downstream 131001 41734581 ~ 41738023 (-)
LOC103038827 LOC108410973 coding downstream 236860 41620999 ~ 41632164 (-)
cpsf3 cpsf3,LOC107756584,LOC107693240,LOC107668237,LOC107549104,LOC107601862 coding downstream 291764 41567196 ~ 41577260 (-)
taf1b NA coding downstream 370914 41489377 ~ 41498110 (-)
klf11 klf11,LOC108410427 coding downstream 395273 41469369 ~ 41473751 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding upstream 5151 41885575 ~ 41911776 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding upstream 178406 42058830 ~ 42061451 (-)
allc allc coding upstream 419445 42299869 ~ 42307990 (-)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding upstream 429926 42310350 ~ 42316742 (-)
LOC103036422 LOC103036422,LOC108411258 coding upstream 839125 42719549 ~ 42727065 (-)
G25491 NA non-coding downstream 89442 41779295 ~ 41779582 (-)
G25474 NA non-coding downstream 138555 41729831 ~ 41730469 (-)
G25472 kidins220b,LOC103040274,LOC108258057 non-coding downstream 139774 41719652 ~ 41729250 (-)
G25473 NA non-coding downstream 151244 41717221 ~ 41717780 (-)
G25400 NA non-coding downstream 329406 41538183 ~ 41539618 (-)
LOC111191902 NA non-coding upstream 43720 41924144 ~ 41927385 (-)
G25528 NA non-coding upstream 76108 41956532 ~ 41956907 (-)
LOC111196609 NA non-coding upstream 191629 42072053 ~ 42076721 (-)
G25559 NA non-coding upstream 314583 42195007 ~ 42195290 (-)
G25578 NA non-coding upstream 437121 42317545 ~ 42324732 (-)
LOC111196508 NA other downstream 3180 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 426530 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 650195 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 1638156 40175262 ~ 40230868 (-)
G24903 NA other downstream 2410835 39455236 ~ 39458189 (-)
G25678 NA other upstream 837242 42717666 ~ 42718389 (-)
G25785 NA other upstream 1218398 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 1614995 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 1794601 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 2010205 43890629 ~ 43899760 (-)

Expression



Co-expression Network