G25642 (acbd3,LOC107601671,LOC107726445,LOC107668205)


Basic Information

Item Value
gene id G25642
gene name acbd3,LOC107601671,LOC107726445,LOC107668205
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42542636 ~ 42544717 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34463
CAGCCTTTCCTCCTCAATCTGCCTcctttcctcttcttctctcttcagtctctcctcctcctcccgccTGCGCCTTTCCTCTTCCTGACGCTGCCACTCCCGCTCCTCTTCTTCTTGACGTCGTATTTCCTCTTCCTCCCTCCTCTTCCTTTCTTGCTCCTCCTTTTCAATCTTGTGTGATGCAACGAATGGTGCAAATAAAGtacagcatttatttaacagctttACAAACTCTACCATGGCCTCATCCTTCTCCATACTTCCCAACGAAGCCCATTCTTTCCTGCGGTCATTTCCCAACACATCAAAGAAGCCCACCTCAGGGGAGGCATCTGGGTTGTAGGGGCCTTGCAGAACCTGCTTGTGGAGGGCCACCAGTCGCAGCTTCTCTTCATATGTTGGGT

Function

symbol description
acbd3 Predicted to enable fatty-acyl-CoA binding activity. Predicted to be active in Golgi membrane. Orthologous to human ACBD3 (acyl-CoA binding domain containing 3).

NR:

description
PREDICTED: Golgi resident protein GCP60 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34463 True 404 lncRNA 0.52 3 42542636 42544717

Neighbor

gene id symbol gene type direction distance location
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding downstream 225894 42310350 ~ 42316742 (-)
allc allc coding downstream 234646 42299869 ~ 42307990 (-)
sox11 sox11b,LOC108411020,LOC107756575,LOC107668258,LOC107601767,LOC108258189 coding downstream 481185 42058830 ~ 42061451 (-)
LOC103030723 rnf144ab,LOC108411012,LOC107549108,LOC107693234,LOC107601775,LOC107668259,LOC107721372 coding downstream 630860 41885575 ~ 41911776 (-)
LOC103041202 NA coding downstream 804613 41734581 ~ 41738023 (-)
LOC103036422 LOC103036422,LOC108411258 coding upstream 174832 42719549 ~ 42727065 (-)
kif25 kif25,LOC107602573,LOC105010024 coding upstream 183709 42728426 ~ 42744729 (-)
acat2 acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107 coding upstream 201757 42746474 ~ 42751642 (-)
wtap wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 coding upstream 207292 42752009 ~ 42759990 (-)
fndc1 fndc1,LOC107549078 coding upstream 281351 42826068 ~ 42891072 (-)
G25628 NA non-coding downstream 25888 42511497 ~ 42516748 (-)
G25607 NA non-coding downstream 145600 42396810 ~ 42397036 (-)
G25579 NA non-coding downstream 216284 42324834 ~ 42326352 (-)
G25578 NA non-coding downstream 217904 42317545 ~ 42324732 (-)
G25559 NA non-coding downstream 347346 42195007 ~ 42195290 (-)
G25691 NA non-coding upstream 257038 42801755 ~ 42804141 (-)
G25697 NA non-coding upstream 278768 42823485 ~ 42824112 (-)
G25718 NA non-coding upstream 371344 42916061 ~ 42916736 (-)
G25739 NA non-coding upstream 486961 43031678 ~ 43033442 (-)
G25769 pdia6 non-coding upstream 501385 43046102 ~ 43047586 (-)
LOC111196586 LOC108262118 other downstream 662212 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 676792 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1100142 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 1323807 41214421 ~ 41218829 (-)
LOC111196341 NA other downstream 2311768 40175262 ~ 40230868 (-)
G25678 NA other upstream 172949 42717666 ~ 42718389 (-)
G25785 NA other upstream 554105 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 950702 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 1130308 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 1345912 43890629 ~ 43899760 (-)

Expression


Co-expression Network