G25650


Basic Information

Item Value
gene id G25650
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42605901 ~ 42606128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34471
GAAACATCTTGATatgattaaatttttttcatCATTGCAATCAGTTTTCACATCAAACACATTGATTTAACTTAATTATACTCTGAAAGAACCCTACCCTAACTATAAGGATGCACTCACACTTGACAGTCTGTGCCATGCCCAAGCACGTTTACCCCCAAAGCTCTTTTTTGCTTTACTAGAGTGAGGGCTTGGACTCAGACTGTGTGTGCATCTAGTGTGCTCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34471 True 228 lncRNA 0.34 1 42605901 42606128

Neighbor

gene id symbol gene type direction distance location
acbd3 acbd3,LOC107549117,LOC107732644,LOC107726445,LOC107601671,LOC107668205 coding upstream 54828 42539342 ~ 42551073 (+)
LOC103034213 NA coding upstream 81828 42516732 ~ 42524073 (+)
LOC103042546 LOC108411077 coding upstream 109583 42403920 ~ 42496318 (+)
rnaseh1 LOC107693208 coding upstream 279497 42317523 ~ 42326404 (+)
kidins220 LOC103040274,LOC108410983,LOC108258057 coding upstream 872355 41708770 ~ 41733546 (+)
sod2 sod2,LOC107732630 coding downstream 156286 42762414 ~ 42766097 (+)
LOC103039464 NA coding downstream 307912 42914040 ~ 42916599 (+)
otof otof coding downstream 316465 42922593 ~ 43034392 (+)
LOC103041928 pdia6,LOC108411347,LOC107732640,LOC107693218,LOC107549125 coding downstream 438064 43044192 ~ 43051887 (+)
LOC103031260 NA coding downstream 486037 43092165 ~ 43111188 (+)
G25625 NA non-coding upstream 85959 42519641 ~ 42519942 (+)
G25624 NA non-coding upstream 100604 42503781 ~ 42505297 (+)
G25602 NA non-coding upstream 208603 42397002 ~ 42397298 (+)
G25577 NA non-coding upstream 283641 42320911 ~ 42322260 (+)
G25560 NA non-coding upstream 409248 42196383 ~ 42196653 (+)
G25647 NA non-coding downstream 111530 42717658 ~ 42718389 (+)
G25657 NA non-coding downstream 121506 42727634 ~ 42729509 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding downstream 147230 42753358 ~ 42759971 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding downstream 723399 43329527 ~ 43341729 (+)
G25834 mgat2,LOC107728126,LOC107564584,LOC107704380 non-coding downstream 744767 43350895 ~ 43356027 (+)
fgfr1op NA other upstream 89259 42497722 ~ 42516642 (+)
G25601 NA other upstream 212963 42391640 ~ 42392938 (+)
G24972 NA other upstream 2780183 39819276 ~ 39825718 (+)
eif2b2 eif2b2,LOC107697194,LOC107685362 other upstream 3208023 39388867 ~ 39397878 (+)
LOC111196173 NA other upstream 3264930 39325083 ~ 39340971 (+)
LOC103026014 LOC103026014,LOC108411425 other downstream 653492 43259620 ~ 43262099 (+)
rps29 NA other downstream 754341 43360469 ~ 43363444 (+)
G25879 NA other downstream 815643 43421771 ~ 43422046 (+)
G25880 NA other downstream 818264 43424392 ~ 43424906 (+)
LOC103033920 LOC108416105 other downstream 884195 43490323 ~ 43494316 (+)

Expression


Co-expression Network