G25697


Basic Information

Item Value
gene id G25697
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42823485 ~ 42824112 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34522
cggggctgcgctcaacgcaacgcaacccagcatgcactgcggcatgcggcggctctctccattgaaatgaatgggatgcGTAGGGGCTTAAGTGCTAGTGGACACGCACcgttaccctgctaattgaagcttcacactctgctcttactggtgcaatgtgcaattaatgaagattggccaccaggctgctccaattaagccatgaaacctcccacactaaaatgacaggtgtttcagtttcattgtccaacccttgatTGTTCATGTAGGTAATTTCAttctttatattatgttattactTTTAAGTATcttaatactttttattatgttaataCATTCCCCACAGTGTGTTAAGaacttaacacaaaaaaaaacacactaacgTATGTGTAGTCGTGACTCCGCTCTGTCAAGTCTGCCACATGGAGAACTCAAAGAAAGAGACAACTGATGAAGTTTATAAGAAATAGGCTGTGTCTGTCgtgcattaaaataattgttCATTATTCATAATTgacataaaatgtttagttaATAATGAATCTTTCTTAGGTTGTACATCATTTTAACCGTTTCAAGTTTACCCATTTAAAATTTCCATCAGGGAGCAGTAAGACAATAAAACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34522 True 628 lncRNA 0.42 1 42823485 42824112

Neighbor

gene id symbol gene type direction distance location
wtap wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 coding downstream 63495 42752009 ~ 42759990 (-)
acat2 acat2,LOC107732634,LOC107549121,LOC107693222,LOC107696107 coding downstream 71843 42746474 ~ 42751642 (-)
kif25 kif25,LOC107602573,LOC105010024 coding downstream 78756 42728426 ~ 42744729 (-)
LOC103036422 LOC103036422,LOC108411258 coding downstream 96420 42719549 ~ 42727065 (-)
rps7 rps7,LOC107668222,LOC107601753,LOC107726469 coding downstream 506743 42310350 ~ 42316742 (-)
fndc1 fndc1,LOC107549078 coding upstream 1956 42826068 ~ 42891072 (-)
c3h2orf70 NA coding upstream 71661 42895773 ~ 42898483 (-)
LOC103042238 hpcal1,LOC108411356,LOC107549126,LOC101077504,LOC108258003 coding upstream 227776 43051888 ~ 43063168 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding upstream 355315 43179427 ~ 43189359 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding upstream 471347 43295459 ~ 43326032 (-)
G25691 NA non-coding downstream 19344 42801755 ~ 42804141 (-)
G25642 acbd3,LOC107601671,LOC107726445,LOC107668205 non-coding downstream 278768 42542636 ~ 42544717 (-)
G25628 NA non-coding downstream 306737 42511497 ~ 42516748 (-)
G25607 NA non-coding downstream 426449 42396810 ~ 42397036 (-)
G25579 NA non-coding downstream 497133 42324834 ~ 42326352 (-)
G25718 NA non-coding upstream 91949 42916061 ~ 42916736 (-)
G25739 NA non-coding upstream 207566 43031678 ~ 43033442 (-)
G25769 pdia6 non-coding upstream 221990 43046102 ~ 43047586 (-)
G25777 NA non-coding upstream 237586 43061698 ~ 43127333 (-)
G25776 NA non-coding upstream 295702 43119814 ~ 43135286 (-)
G25678 NA other downstream 105096 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 943061 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 957641 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1380991 41436041 ~ 41442494 (-)
G25265 slco5a1 other downstream 1604656 41214421 ~ 41218829 (-)
G25785 NA other upstream 274710 43098822 ~ 43111401 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 671307 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 850913 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 1066517 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1945152 44769264 ~ 44799505 (-)

Expression


Co-expression Network