G25874


Basic Information

Item Value
gene id G25874
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43360488 ~ 43363090 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34756
TTTTTGAAAACACTCGACCCCAAGTATGAAAACCAAGAACGACAACAGttttaaccagaaaaaaaagtgtttattgggAATTCCAATTCAACTTCATCTTGGTGGctttggatgagttgtccacaTGGCTGGTGCTCAGCAATCCAAGCACTTAATCCATCTTATAAAGCCGATGTCCTTTGCATATTGTCTGAAGCACTGACGGCACATGTTGAGCCCATATTTGCGAATCAGACCATGTCTGTTTGAGCATACACGgctGATCGGGATCCCTGGCCGAATTTCCGCGGGTGACTCCAGTAGAGCTGCTGGTGGCCCATCTTGTCTCTCTCGCTCGGGATGTCGAAAAGGAAGGAGCA
>TU34757
TTTTTGAAAACACTCGACCCCAAGTATGAAAACCAAGAACGACAACAGttttaaccagaaaaaaaagtgtttattgggAATTCCAATTCAACTTCATCTTGGTGGctttggatgagttgtccacaTGGCTGGTGCTCAGCAATCCAAGCACTTAATCCACTTTATAAAGCCGATGTCCTTTGCATATTGTCTGAAGCACTGACGGCACATGTTGAGCCCATATTTGCGAATCAGACCATGTCTGTTTGAGCATACACGgctGATCGGGATCCCTGGCCGAATTTCCGCGGGTGACTCCAGTAGAGCTGCTGGTGGCCCATCTTGTCTCTCTCGCTCGGGATGTCGAAAAGGAAGGAGCA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU34756 True 359 lncRNA 0.41 3 43360488 43363090
TU34757 False 359 lncRNA 0.47 3 43360488 43363090

Neighbor

gene id symbol gene type direction distance location
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding downstream 4488 43350893 ~ 43356000 (-)
LOC103024454 hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 coding downstream 18972 43336847 ~ 43341516 (-)
LOC103024139 LOC107100300,LOC107378075,LOC108257811 coding downstream 23819 43328607 ~ 43336669 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding downstream 34456 43295459 ~ 43326032 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding downstream 171129 43179427 ~ 43189359 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding upstream 236567 43599657 ~ 43664802 (-)
LOC103034775 NA coding upstream 303757 43666847 ~ 43672990 (-)
LOC103035096 NA coding upstream 325808 43688898 ~ 43703969 (-)
LOC103035417 NA coding upstream 346638 43709728 ~ 43716198 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding upstream 583889 43946979 ~ 43981364 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 181269 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 189274 43160421 ~ 43171214 (-)
G25776 NA non-coding downstream 225202 43119814 ~ 43135286 (-)
G25774 NA non-coding downstream 228736 43124819 ~ 43131752 (-)
G25777 NA non-coding downstream 233155 43061698 ~ 43127333 (-)
G25902 NA non-coding upstream 98579 43461669 ~ 43462154 (-)
G25903 NA non-coding upstream 120999 43484089 ~ 43484368 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding upstream 503286 43866376 ~ 43885038 (-)
G26009 NA non-coding upstream 558786 43921876 ~ 43924352 (-)
G26024 NA non-coding upstream 637898 44000988 ~ 44001408 (-)
G25785 NA other downstream 249087 43098822 ~ 43111401 (-)
G25678 NA other downstream 642099 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1480064 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 1494644 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 1917994 41436041 ~ 41442494 (-)
LOC103027084 LOC108416115,LOC103358919 other upstream 132329 43495419 ~ 43517157 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 311935 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 527539 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1406174 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 1493009 44856099 ~ 44870690 (-)

Expression


Co-expression Network