LOC111191905


Basic Information

Item Value
gene id LOC111191905
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43463600 ~ 43465928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34774
GCGAAACAGTGGTCAGATTTCACCTGTCAAATGTCAATTAGGAAACGCTGACCATCTCCATCCTGCTACGCTGGTCGCTCTCTTTAGGAACGACGCAGCCACATCCTCAGCGAAGCTGACGTCACCATTTTGCTACTTGAGAGACGGGTAATTTCAGCACACCTGTCACACATTAGACCAGAACTGGACCTACTGCTGAACGCTCAGCAAG
>XR_002649720.1
TACCCTATGGCGAAACAGTGGTCAGATTTCACCTGTCAAATGTCAATTAGGAAACGCTGACCATCTCCATCCTGCTACGCTGGTCGCTCTCTTTAGGAACGACGCAGCCACATCCTCAGCGAAGCTGACGTCACCATTTTGCTACTTGAGAGACGGGTAATTTCAGCACACCTGTCACACATTAGACCAGAACTGGACCTACTGCTGAACGCTCAGCAAGCTCATTCAACACTGTCTAAGATGTAGGATAAAGTAAAGATCTACCGgtgggcatatatatatatattaattctttCACTTttggggttggctccgcccctgtctccaatgtacgacaggatctgcagagcccagatgtatcaagtcctgggccgatgacggggcctacgccaaaTACTCTACTAGAAGACTGTTTCATTATAACCTCTTCatatatgtatctttgttttgctaaatatgttaaaacattaaatcgtgcaactgacaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34774 False 211 lncRNA 0.50 1 43463609 43463819
XR_002649720.1 True 489 lncRNA 0.45 2 43463600 43465928

Neighbor

gene id symbol gene type direction distance location
LOC103026793 adcy1a,LOC108416099,LOC108257925,LOC107708029,LOC107697434,LOC107559745,LOC107581454,LOC107687179 coding upstream 4843 43428463 ~ 43458757 (+)
LOC103031694 myh6,LOC103031694,LOC102786665,LOC108251423,LOC780532 coding upstream 284381 43172940 ~ 43179219 (+)
LOC103030407 LOC108411385 coding upstream 292365 43136783 ~ 43171235 (+)
LOC103030938 NA coding upstream 328212 43115778 ~ 43135388 (+)
LOC103031260 NA coding upstream 352412 43092165 ~ 43111188 (+)
LOC103027693 mcm3l,LOC108416133,LOC107712296,LOC108258154,LOC107697457 coding downstream 209073 43675001 ~ 43688806 (+)
LOC103035929 palld,LOC107665352 coding downstream 255834 43721762 ~ 43883044 (+)
trmt1l trmt1l,LOC107698377 coding downstream 433874 43899802 ~ 43909913 (+)
LOC103028025 NA coding downstream 445905 43911833 ~ 43943410 (+)
mettl11b mettl11b,LOC107696087,LOC107698334,LOC107726432,LOC107732414 coding downstream 520726 43986654 ~ 43998810 (+)
G25834 mgat2,LOC107728126,LOC107564584,LOC107704380 non-coding upstream 107573 43350895 ~ 43356027 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding upstream 121871 43329527 ~ 43341729 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding upstream 703629 42753358 ~ 42759971 (+)
G25657 NA non-coding upstream 734091 42727634 ~ 42729509 (+)
G25647 NA non-coding upstream 745211 42717658 ~ 42718389 (+)
G25888 NA non-coding downstream 18167 43484095 ~ 43484399 (+)
G25893 NA non-coding downstream 50870 43516798 ~ 43517094 (+)
G25914 NA non-coding downstream 130110 43596038 ~ 43644026 (+)
G25925 NA non-coding downstream 200693 43666621 ~ 43673719 (+)
G25934 NA non-coding downstream 237255 43703183 ~ 43703697 (+)
G25880 NA other upstream 38694 43424392 ~ 43424906 (+)
G25879 NA other upstream 41554 43421771 ~ 43422046 (+)
rps29 NA other upstream 100156 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 201501 43259620 ~ 43262099 (+)
fgfr1op NA other upstream 946958 42497722 ~ 42516642 (+)
LOC103033920 LOC108416105 other downstream 24395 43490323 ~ 43494316 (+)
fau fau,LOC108411505,LOC107704371 other downstream 3062440 46528368 ~ 46549553 (+)
G26915 NA other downstream 4812339 48278267 ~ 48315894 (+)
G26995 NA other downstream 5089869 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 5112875 48578803 ~ 48618075 (+)

Expression


Co-expression Network