G25888


Basic Information

Item Value
gene id G25888
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43484095 ~ 43484399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34776
CGGGTACACTATTGGGGGGCTGGTTGAGCGTGGCTGGTATGCCGACGGGAGTTTATTGAGCTGAGTATTAGCATTTGTGGTGGTAGCTGCCAATCCACCGTTAACTCCTACCAGTGTAGCGTGTAAatagtttgtatatatattgtaaatttcgttttgttttcatttttgtttttgggttCGGATGCTTAATTTGTCACAATAAACACTTCAAAAGGGATTCTTACCTGGTTCCAGGCTGTTTTTGCGTCTCTGCCTCACCTCTCTCCGGTAACCTCCTGACCACTTGTCCTCACACTCCCACA

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU34776 True 305 lncRNA 0.43 1 43484095 43484399

Neighbor

gene id symbol gene type direction distance location
LOC103026793 adcy1a,LOC108416099,LOC108257925,LOC107708029,LOC107697434,LOC107559745,LOC107581454,LOC107687179 coding upstream 25338 43428463 ~ 43458757 (+)
LOC103031694 myh6,LOC103031694,LOC102786665,LOC108251423,LOC780532 coding upstream 304876 43172940 ~ 43179219 (+)
LOC103030407 LOC108411385 coding upstream 312860 43136783 ~ 43171235 (+)
LOC103030938 NA coding upstream 348707 43115778 ~ 43135388 (+)
LOC103031260 NA coding upstream 372907 43092165 ~ 43111188 (+)
LOC103027693 mcm3l,LOC108416133,LOC107712296,LOC108258154,LOC107697457 coding downstream 190602 43675001 ~ 43688806 (+)
LOC103035929 palld,LOC107665352 coding downstream 237363 43721762 ~ 43883044 (+)
trmt1l trmt1l,LOC107698377 coding downstream 415403 43899802 ~ 43909913 (+)
LOC103028025 NA coding downstream 427434 43911833 ~ 43943410 (+)
mettl11b mettl11b,LOC107696087,LOC107698334,LOC107726432,LOC107732414 coding downstream 502255 43986654 ~ 43998810 (+)
LOC111191905 NA non-coding upstream 18167 43463600 ~ 43465928 (+)
G25834 mgat2,LOC107728126,LOC107564584,LOC107704380 non-coding upstream 128068 43350895 ~ 43356027 (+)
G25828 hsp90aa1.1,LOC108411456,LOC101068853,LOC103369947,LOC108231826,LOC105919227,LOC102218115,LOC103457915,LOC103024454,LOC108257813,LOC108411468,LOC107704347,LOC107557012 non-coding upstream 142366 43329527 ~ 43341729 (+)
G25662 wtap,LOC107696108,LOC107601562,LOC107726473,LOC107549122 non-coding upstream 724124 42753358 ~ 42759971 (+)
G25657 NA non-coding upstream 754586 42727634 ~ 42729509 (+)
G25893 NA non-coding downstream 32399 43516798 ~ 43517094 (+)
G25914 NA non-coding downstream 111639 43596038 ~ 43644026 (+)
G25925 NA non-coding downstream 182222 43666621 ~ 43673719 (+)
G25934 NA non-coding downstream 218784 43703183 ~ 43703697 (+)
G25956 NA non-coding downstream 437140 43921539 ~ 43924269 (+)
G25880 NA other upstream 59189 43424392 ~ 43424906 (+)
G25879 NA other upstream 62049 43421771 ~ 43422046 (+)
rps29 NA other upstream 120651 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 221996 43259620 ~ 43262099 (+)
fgfr1op NA other upstream 967453 42497722 ~ 42516642 (+)
LOC103033920 LOC108416105 other downstream 5924 43490323 ~ 43494316 (+)
fau fau,LOC108411505,LOC107704371 other downstream 3043969 46528368 ~ 46549553 (+)
G26915 NA other downstream 4793868 48278267 ~ 48315894 (+)
G26995 NA other downstream 5071398 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 5094404 48578803 ~ 48618075 (+)

Expression


Co-expression Network