LOC103027084 (LOC108416115,LOC103358919)


Basic Information

Item Value
gene id LOC103027084
gene name LOC108416115,LOC103358919
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43495419 ~ 43517157 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34784
CAATATCGACCAGGCGAGACCAAGCCTCTACAGGCGCTGCTGGAGGGACGCGGGGTGTGCGCGAAGGCGCCCCGCAACAAACCGGCCGGAGGCGTCGTGGCGCGCGGGAACGAAAGCCATGTGGTTCCAGAACAGGAGCGTCTCTCCAACTCTACTGTGGCAACGGTCACCGAGGGCATTGAGGTGGCGCAGCGCACAGCAACAGATTCAGGGCTTGATGTGGGCAGCCAGAGAACAGTGCTGGAGCCTAAAGGCTCTCTGCTGCACACCAAACTGGGCATAATTCAGAAGGAGCAGTCGAAGAACAGCCAGAGCTACAAAGTGGAGTCAGTGGCCAGCAGCGTCCACACTGACATCCACAATTTCAGTCTGGAGTCCAAAAGAGAGACTGAGGCCCGTGTCGTAGGGAGATGGAGAGTGTTTTGAAGAGTCTTAAGATATCCAATGTGTTGAACCCCCGATTCTTCCGCATTCCAAACTGTGACAGAAAGGGCTTCTACAAGAAGAAACAGTGTCGTCCATCCAAAGGCCGCAGAAGAGGTTACTGTTGGTGTGTGGACAAGTATGGACAGGCTTTGCCAGGCTATGAAGGAAAAGAACAAGGCCAAGTCCACTGTTataacctggaaaaaaaatgagaagatGGAGAGATGGGTGGAGGTATGGTATGAATCCACAGTGAAAGGGGGGGAGGGGAGATTTTTACAGGTGCTGCCCTATTGCTGAGCACCTCACCTATGCGCTGGAGCAAAGAACTCATCAGACCAGGTCACTTTTACACATCAGGGGAGTGAAGGGGGAGGGGTGAGATGACGATCTGCACTATTCTTCTTGTCCTGTTTGGATTATACCCGAAAAGGACACCAGAGAGACGCTAACAAAAAGGACATCCACACGTTGCATTTCTAAAATGCCCAAGATTAACACTGTGTTCGTATGCGTACAAGAGCTATATAACCTACGCGTACATGTCTGGGTTACAGCATACAGTCAACCCTTTCTCTTTTCTGGTAAAATGAAGAGCCTTCTTTGAATCACTGCCATgactatcactgtctctctcataGCCCCCTGTCCCTTCCAAAGGCTTCCTATTACTGCCTGGTGTAGGACCTTCTGTTTGAATAAAATACGGGCATGCTCAGTAGTGCCGGGTCTGCTCCTGCCATTGGCTCCATCTGAAGCACAAGCACTTGACGCACTTTGGCCCCTCGCTGAACAGCTACTCCGGTTTTTAACAGTGGCCGTGtcataatactttttttttttttttacatgtacaaGCACCCATTACAAAATTCTTTTCTTTTATGCCATATCAGGACCTTATAAATCACGCTGAATGACCTTTACAAAAGTCACTTCAGCGCaatttttgttgctgtttttttttttttcctttattcacTGTATTTGCTTCTAAGTTCACTTGCTCACTTAAGCCCTTGTTAAGGATTTGGAAGATTTGTTGCATGTCTTTCTGATGCCTGTTTTCCTGTTCAGCTGGAAAGAGAAGAGGATGTAAGATATCAAAGCTGTAGCCTGCAGCATGCTTCCAAATAGATTCCAGATGGATATAATACACAGCACACATCTTCAATGCACTAATATAGATCACAGAGCACTTAATAGTAGCAATGCTGATTTTTATACGCCATTTTTATATTGGCACTGGTATTCTTCTCAAATATTTGAATGTAACGGAAATGCGACAGTACCTTGCATTGCCGCTGCATAGCTGGTGCACTCCAAAGCTTGACAATAATCACTGGCAGGTTTTTTTGTTGTCGTTTTTtcctgttcttcttcttctttttattttttttcaaatcaatgCCTTAATCTCTTCAGTGCCGAAATGTGACAAATAACAGTTAGAGGTGGAAAGTGAGTGTTCTGTCTCTTTACATATTGTCCAGCTATTTTACACAAACGACAAGGCTACAGGTGACCCTGTTGGATAGGTTGTGTTTATTATGTTACAGGAAGGATGTCTGGTCttattctgtctctgtctgaccTCCTGAAAAAAGACTTGAAAAGTGGAGGGTTCCCCGGAGAGGTGACCCACCCAGCAGCTCAGTAGCACAGAATCGGCCAAAAAGCTTGACCCTTCCCCTGACATCCCAAAAAAAAGACCCCTCTCAAACACTACAAATTCACATACGATAAAGACTAAAGACTTAAGAAATGTTGGTGCTACACCGTTTCTCTTTGAATGACTTGATTTTGGGGGAAGAGCATAAAACTATGCTTAGCTATTGGCCCTCCTTCCTTTAACttgtgtgttatttttatttgagtatGTTTGCTGTCACGCAATTACCTTATAtctccattttcttttttcagtttttgacataatgtgaatctggcagaattgtatgatgaatggaccaatagaaatgaaaatgtacctttttataaaatcttttttttcattgacttccatttaaacTCCTGTAGAGTTGCCATTTCGGAGATAGAAGGTTTTTGTGTGACCACagtgatatataaatatattatttctgGCCAGCTATGTGTATGAAGAGGCATGTGAACATTACTTTAAAAGACCGAAGTTATTTATCGAAGAAAGAGATATAAGCTGATCCaaaccttttctttcttttgagaATTAAGTGACTCATTGATTGCACAACAGTGAATAGATAGAACTCAGCATGTTTTTGGGAATATAATCACtaaagttatttttgttttatatatatatatattatattattatattatatatatatatatatattttgtcaacAGTGCAGTGTGCAAAATCTCAGCGATTAATTAAGGAATGGTTCTGTTCTTGGTAGAGTGGTGTACTATAAAACATCTTCAGGTTTCTTAGGTCTTCTCTTGGCATAAACTACTAGATCTAAGCTAAGTGTTATCTGATCTGAAGTTAGTCGTTGGCTAAGTTAAATATTTAGAACATTGTTCAAGATTAAGCTAAAACAAAGTGAATGTTCACATTCAGCTGATGCTAAGCTAACATTTAATCTGCAGCTAAGATAATATCAGAGCTAAGGGAAAGCTGatgtacagaagaaaaaaaacttgccaCCCACATTCTGTTGTGCAATGCCAGGGCCACTTCTCGCCGCAAGTCACTTTTAAGGATCTCTCCGTTCACGGGtaattgtattttctttttttttatcatttaaaagaaTTTTGATTCTTTAAAAAGCTTTTCATTTTACTAAACT
>TU34785
GGAGAAGCGCAGCCGCCCAGGCGGGGTGTACAGCCGAGCCAGAACGACGTGACAGAGACCCCCTCTCGTGACACACGATCCCACTCCCCGATACTCCCCCGTCTTCTGCACGCGCTCCGAGCTCTGCTACGCCGGGCTTtgctattgtttttgtttgtttgttttctgccgGTTTCGCACTTTTTTCCTTCACGAGCGCTTTTCTAAGCTACTCTGAAGAAGGAGGGCACTCTGACCCCGGATCTCGCGCCTTCAccatcttcctcctcctcctcctctcccccGCGCGTCAGATGACGGCGGCGCAGCGCGCGCTCTGTCTGGCGGCGCTGCTCGCGGCCGCCTCGGCTGCCGGCCGCACGGCGCGCGCCTCGGGCCCCGTGGTGCGCTGCGAGCCGTGCGACGAAGGCGCGCTCGTGCAGTGCAAGCCGCTGCCGCGCGAGTGTGCGGAGCGCGTGCGTGAGCCCGGCTGCGGC
>XM_022686394.1
GCGTGCTTTTCCTGCCCCGTATAAAGCGCGCTCGTGCAGCGGAGCGCAGTTACAGATGGAGAAGCGCAGCCGCCCAGGCGGGGTGTACAGCCGAGCCAGAACGACGTGACAGAGACCCCCTCTCGTGACACACGATCCCACTCCCCGATACTCCCCCGTCTTCTGCACGCGCTCCGAGCTCTGCTACGCCGGGCTTtgctattgtttttgtttgtttgttttctgccgGTTTCGCACTTTTTTCCTTCACGAGCGCTTTTCTAAGCTACTCTGAAGAAGGAGGGCACTCTGACCCCGGATCTCGCGCCTTCAccatcttcctcctcctcctcctctcccccGCGCGTCAGATGACGGCGGCGCAGCGCGCGCTCTGTCTGGCGGCGCTGCTCGCGGCCGCCTCGGCTGCCGGCCGCACGGCGCGCGCCTCGGGCCCCGTGGTGCGCTGCGAGCCGTGCGACGAAGGCGCGCTCGTGCAGTGCAAGCCGCTGCCGCGCGAGTGTGCGGAGCGCGTGCGTGAGCCCGGCTGCGGCTGCTGCATGACGTGCGCGCTTGCCGAGGGCCAGCCGTGCGGTGTGTACACGGGCCGCTGCGGCGCGGGGCTCACGTGCCAATATCGACCAGGCGAGACCAAGCCTCTACAGGCGCTGCTGGAGGGACGCGGGGTGTGCGCGAAGGCGCCCCGCAACAAACCGGCCGGAGGCGTCGTGGCGCGCGGGAACGAAAGCCATGTGGTTCCAGAACAGGAGCGTCTCTCCAACTCTACTGTGGCAACGGTCACCGAGGGCATTGAGGTGGCGCAGCGCACAGCAACAGATTCAGGGCTTGATGTGGGCAGCCAGAGAACAGTGCTGGAGCCTAAAGGCTCTCTGCTGCACACCAAACTGGGCATAATTCAGAAGGAGCAGTCGAAGAACAGCCAGAGCTACAAAGTGGAGTCAGTGGCCAGCAGCGTCCACACTGACATCCACAATTTCAGTCTGGAGTCCAAAAGAGAGACTGAGTATGGCCCGTGTCGTAGGGAGATGGAGAGTGTTTTGAAGAGTCTTAAGATATCCAATGTGTTGAACCCCCGATTCTTCCGCATTCCAAACTGTGACAGAAAGGGCTTCTACAAGAAGAAACAGTGTCGTCCATCCAAAGGCCGCAGAAGAGGTTACTGTTGGTGTGTGGACAAGTATGGACAGGCTTTGCCAGGCTATGAAGGAAAAGAACAAGGCCAAGTCCACTGTTataacctggaaaaaaaatgagaagatGGAGAGATGGGTGGAGGTATGGTATGAATCCACAGTGAAAGGGGGGGAGGGGAGATTTTTACAGGTGCTGCCCTATTGCTGAGCACCTCACCTATGCGCTGGAGCAAAGAACTCATCAGACCAGGTCACTTTTACACATCAGGGGAGTGAAGGGGGAGGGGTGAGATGACGATCTGCACTATTCTTCTTGTCCTGTTTGGATTATACCCGAAAAGGACACCAGAGAGACGCTAACAAAAAGGACATCCACACGTTGCATTTCTAAAATGCCCAAGATTAACACTGTGTTCGTATGCGTACAAGAGCTATATAACCTACGCGTACATGTCTGGGTTACAGCATACAGTCAACCCTTTCTCTTTTCTGGTAAAATGAAGAGCCTTCTTTGAATCACTGCCATgactatcactgtctctctcataGCCCCCTGTCCCTTCCAAAGGCTTCCTATTACTGCCTGGTGTAGGACCTTCTGTTTGAATAAAATACGGGCATGCTCAGTAGTGCCGGGTCTGCTCCTGCCATTGGCTCCATCTGAAGCACAAGCACTTGACGCACTTTGGCCCCTCGCTGAACAGCTACTCCGGTTTTTAACAGTGGCCGTGtcataatactttttttttttttttacatgtacaaGCACCCATTACAAAATTCTTTTCTTTTATGCCATATCAGGACCTTATAAATCACGCTGAATGACCTTTACAAAAGTCACTTCAGCGCaatttttgttgctgtttttttttttttcctttattcacTGTATTTGCTTCTAAGTTCACTTGCTCACTTAAGCCCTTGTTAAGGATTTGGAAGATTTGTTGCATGTCTTTCTGATGCCTGTTTTCCTGTTCAGCTGGAAAGAGAAGAGGATGTAAGATATCAAAGCTGTAGCCTGCAGCATGCTTCCAAATAGATTCCAGATGGATATAATACACAGCACACATCTTCAATGCACTAATATAGATCACAGAGCACTTAATAGTAGCAATGCTGATTTTTATACGCCATTTTTATATTGGCACTGGTATTCTTCTCAAATATTTGAATGTAACGGAAATGCGACAGTACCTTGCATTGCCGCTGCATAGCTGGTGCACTCCAAAGCTTGACAATAATCACTGGCAGGTTTTTTTGTTGTCGTTTTTtcctgttcttcttcttctttttattttttttcaaatcaatgCCTTAATCTCTTCAGTGCCGAAATGTGACAAATAACAGTTAGAGGTGGAAAGTGAGTGTTCTGTCTCTTTACATATTGTCCAGCTATTTTACACAAACGACAAGGCTACAGGTGACCCTGTTGGATAGGTTGTGTTTATTATGTTACAGGAAGGATGTCTGGTCttattctgtctctgtctgaccTCCTGAAAAAAGACTTGAAAAGTGGAGGGTTCCCCGGAGAGGTGACCCACCCAGCAGCTCAGTAGCACAGAATCGGCCAAAAAGCTTGACCCTTCCCCTGACATCCCAAAAAAAAGACCCCTCTCAAACACTACAAATTCACATACGATAAAGACTAAAGACTTAAGAAATGTTGGTGCTACACCGTTTCTCTTTGAATGACTTGATTTTGGGGGAAGAGCATAAAACTATGCTTAGCTATTGGCCCTCCTTCCTTTAACttgtgtgttatttttatttgagtatGTTTGCTGTCACGCAATTACCTTATAtctccattttcttttttcagtttttgacataatgtgaatctggcagaattgtatgatgaatggaccaatagaaatgaaaatgtacctttttataaaatcttttttttcattgacttccatttaaacTCCTGTAGAGTTGCCATTTCGGAGATAGAAGGTTTTTGTGTGACCACagtgatatataaatatattatttctgGCCAGCTATGTGTATGAAGAGGCATGTGAACATTACTTTAAAAGACCGAAGTTATTTATCGAAGAAAGAGATATAAGCTGATCCaaaccttttctttcttttgagaATTAAGTGACTCATTGATTGCACAACAGTGAATAGATAGAACTCAGCATGTTTTTGGGAATATAATCACtaaagttatttttgttttatatatatatatattatattattatattatatatatatatatatattttgtcaacAGTGCAGTGTGCAAAATCTCAGCGATTAATTAAGGAATGGTTCTGTTCTTGGTAGAGTGGTGTACTATAAAACATCTTCAGGTTTCTTAGGTCTTCTCTTGGCATAAACTACTAGATCTAAGCTAAGTGTTATCTGATCTGAAGTTAGTCGTTGGCTAAGTTAAATATTTAGAACATTGTTCAAGATTAAGCTAAAACAAAGTGAATGTTCACATTCAGCTGATGCTAAGCTAACATTTAATCTGCAGCTAAGATAATATCAGAGCTAAGGGAAAGCTGatgtacagaagaaaaaaaacttgccaCCCACATTCTGTTGTGCAATGCCAGGGCCACTTCTCGCCGCAAGTCACTTTTAAGGATCTCTCCGTTCACGGGtaattgtattttctttttttttatcatttaaaagaaTTTTGATTCTTTAAAAAGCTTTTCATTTTACTAAACTAGATATTACACAGCTATGCCTTTCTTTAAgaaaggaaatgttttttttgttcaaatataatttgtatttaatgtcttttttaaaataaaa

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein 3

GO: NA

KEGG:

id description
K10138 IGFBP3; insulin-like growth factor-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU34784 False 3230 lncRNA 0.41 4 43495509 43516546
TU34785 False 476 lncRNA 0.67 1 43516625 43517100
XM_022686394.1 True 3935 mRNA 0.45 4 43495419 43517157

Neighbor

gene id symbol gene type direction distance location
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding downstream 139419 43350893 ~ 43356000 (-)
LOC103024454 hsp90aa1.1,LOC103024454,LOC108411468,LOC108257813,LOC107704377,LOC107557012,LOC107564585 coding downstream 153903 43336847 ~ 43341516 (-)
LOC103024139 LOC107100300,LOC107378075,LOC108257811 coding downstream 158750 43328607 ~ 43336669 (-)
LOC103025090 ppp2r5cb,ppp2r5c,LOC103025090,LOC108411434,LOC107704375,LOC108257814,LOC104924693,LOC103369946,LOC100694131,LOC101473650 coding downstream 169387 43295459 ~ 43326032 (-)
slc25a29 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC108257962,LOC107564594 coding downstream 306060 43179427 ~ 43189359 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding upstream 82500 43599657 ~ 43664802 (-)
LOC103034775 NA coding upstream 149690 43666847 ~ 43672990 (-)
LOC103035096 NA coding upstream 171741 43688898 ~ 43703969 (-)
LOC103035417 NA coding upstream 192571 43709728 ~ 43716198 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding upstream 429822 43946979 ~ 43981364 (-)
G25903 NA non-coding downstream 11051 43484089 ~ 43484368 (-)
G25902 NA non-coding downstream 33265 43461669 ~ 43462154 (-)
G25874 NA non-coding downstream 132329 43360488 ~ 43363090 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 316200 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 324205 43160421 ~ 43171214 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding upstream 349219 43866376 ~ 43885038 (-)
G26009 NA non-coding upstream 404719 43921876 ~ 43924352 (-)
G26024 NA non-coding upstream 483831 44000988 ~ 44001408 (-)
G26025 NA non-coding upstream 497983 44015140 ~ 44015348 (-)
G26031 NA non-coding upstream 518370 44035527 ~ 44035757 (-)
G25785 NA other downstream 384018 43098822 ~ 43111401 (-)
G25678 NA other downstream 777030 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1614995 41869024 ~ 41880424 (-)
LOC111196508 NA other downstream 1629575 41856095 ~ 41865844 (-)
arhgap11a NA other downstream 2052925 41436041 ~ 41442494 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other upstream 157868 43675025 ~ 43678862 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 373472 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 1252107 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 1338942 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 1365621 44882778 ~ 44885801 (-)

Expression


Co-expression Network