G25956


Basic Information

Item Value
gene id G25956
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43921539 ~ 43924269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34860
tcgtaatcttcttattctacttattattattattataataatttaaaacactaCTCCTCCCACAGCTTTTGACGTAGAATCACGAAATTTTGCAGTATCGTAGGACCTTGTGCTTTTTGAAGCGATACAtcgtacggttttcgtaaaaacttcgtaaacgtatgcatttttttcccataggaatgaatggggcgAAATTTTAAACGTTCGTAACCGccacaatttttgagatacgaACACCAAATTCGGTGAGCTTATACATCTTATCGAGATCTTTAAATTAATAGGTTTTCGTACAATTGTCGTACGAAGTTTtcccatagaaatgaatggggggcccagagttccatctcacacacgagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcacaCCAGCCAGGGCTAAGCGACCACttattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttggaaaacgttagcaactgcctagcaaccactagcaaccacttagcaaccactttagaaattatagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagaaactgcctagcaacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaacagcttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaattatagcaactgcctagcaaccagttagcaacaccttagcaaccaccaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34860 True 1053 lncRNA 0.44 2 43921539 43924269

Neighbor

gene id symbol gene type direction distance location
trmt1l trmt1l,LOC107698377 coding upstream 11626 43899802 ~ 43909913 (+)
LOC103035929 palld,LOC107665352 coding upstream 38495 43721762 ~ 43883044 (+)
LOC103027693 mcm3l,LOC108416133,LOC107712296,LOC108258154,LOC107697457 coding upstream 232733 43675001 ~ 43688806 (+)
LOC103026793 adcy1a,LOC108416099,LOC108257925,LOC107708029,LOC107697434,LOC107559745,LOC107581454,LOC107687179 coding upstream 462782 43428463 ~ 43458757 (+)
LOC103031694 myh6,LOC103031694,LOC102786665,LOC108251423,LOC780532 coding upstream 742320 43172940 ~ 43179219 (+)
mettl11b mettl11b,LOC107696087,LOC107698334,LOC107726432,LOC107732414 coding downstream 62385 43986654 ~ 43998810 (+)
gorab gorab coding downstream 111555 44035824 ~ 44041444 (+)
prrx1 prrx1,prrx1b,LOC108439841,LOC107553451,LOC107698373,LOC108257538 coding downstream 117496 44041765 ~ 44056322 (+)
LOC103028637 LOC108439839 coding downstream 153558 44077827 ~ 44195882 (+)
elp3 elp3,LOC107696156,LOC107698368,LOC107599080 coding downstream 294936 44219205 ~ 44254232 (+)
G25934 NA non-coding upstream 217842 43703183 ~ 43703697 (+)
G25925 NA non-coding upstream 247820 43666621 ~ 43673719 (+)
G25914 NA non-coding upstream 277513 43596038 ~ 43644026 (+)
G25893 NA non-coding upstream 404445 43516798 ~ 43517094 (+)
G25888 NA non-coding upstream 437140 43484095 ~ 43484399 (+)
G26039 NA non-coding downstream 183672 44107941 ~ 44202534 (+)
G26043 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107698369,LOC107726431,LOC107599081 non-coding downstream 332204 44256473 ~ 44263202 (+)
G26088 NA non-coding downstream 348025 44272294 ~ 44272504 (+)
G26107 LOC108439850 non-coding downstream 395717 44319986 ~ 44323822 (+)
G26121 NA non-coding downstream 440323 44364592 ~ 44367931 (+)
LOC103033920 LOC108416105 other upstream 427223 43490323 ~ 43494316 (+)
G25880 NA other upstream 496633 43424392 ~ 43424906 (+)
G25879 NA other upstream 499493 43421771 ~ 43422046 (+)
rps29 NA other upstream 558095 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 659440 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 2604099 46528368 ~ 46549553 (+)
G26915 NA other downstream 4353998 48278267 ~ 48315894 (+)
G26995 NA other downstream 4631528 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 4654534 48578803 ~ 48618075 (+)
G27075 NA other downstream 4816945 48741214 ~ 48742439 (+)

Expression


Co-expression Network