G25986 (palld,LOC107755258,LOC106560254)


Basic Information

Item Value
gene id G25986
gene name palld,LOC107755258,LOC106560254
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43866376 ~ 43885038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34910
GAGAGCATTCCATATACAGGCACAGATTGGCGTGGAAATGgaagggaaaagaaaaaaaaaaaatacaataaaatcgTTCAGCATGAGTCCCATAATGCATTGGTGCTGAGACAGAGGTAActgctaaaaatattaaaaggcaAAGTGTAAATATGTAGTCGTATGTTTAGATACATATTATCAAAACAGAATTGCAAGAGATTTAActctgtgcatttttttttttttatgtcaatcTAACTGTCCAGGAAATCGCTCCACAAGTCATTAAGTACCAGAGTTGCGTGCAcattgtatgtatgtttatttattgatataatttttatttatttattattattaaattaaaaggtCTAAACAGGAAAGGTCTACATAATGTGTGATGGCAGTACACAGTCtgtcagttaaaaataaaaagcaatcagaaaattgagaaaatcactaaaataaatgtaagagtCTGTGTAAGTATAAATACTGTAACTCCACTGTTTTCCTTCCTCCTCTCCTGAAAAAGCATACAGTCACATACTGTGGTAAACACGCGTCCGCCATTGCTATAACCTGCTaactgcatctgtgtgtgtgtttgtgattccAAACTTCAAAAACAGAAGTGTATACCCAACACAATCATCAtcgttatcatcatcatcatgtagTTTGAATTCTTCGTAACCAAACACTTGTTTTGTCAAATGACACCacattcactctcactctctttcagtCAACTGAGTCAATCCCTTTCATTCTCTCCTCAACTAACTATTCATGCCTACAAGTAACCTCACACCACCTTCCCTATACCTTTCCTCACAGGCCTCTCCTATCAGTTTTAGAAATGAAAAAGTTGAGGAAACACCAGTCATTATTAAACCATCGTTCAACCTCACAACTCACATCAATCTCATCAAATCCAACTACAACACCACCTCACCCTTCCACTCCCTCAAGatcaagaaaaaaattatatatatatatatatatatatatataaggcccGGCCTTGTGCAATATCTATGGCAttgtgctaatgctaaatcCAGACTGTGTGGATATCTGTGGTAGTGTGTTCAGTCTATCTACAGCTACGCCGCAGCGGTTCACATAGAAAAGTCCACTAAGTCCATTTCTGAACCCCCTCAACAGATTCCTAAGCCCCATATCTGACTCAAATCAGTCCTATCCAAGTTCCAATGCATCCCCAGCAATATCCACATCAATTCCACCTCTAAATCACTGCACGTTTACccaaaaatctctctctctctctctgctagaAATGAACAGACCATCTCATTTCCAGCAGCTTATAAATACAAAGTAAGGCACTGAGTAAATACTACGGAAGTATTAAATGTTGGCACCTTTGTAACACATGCAGAACTACATGCTACTTTATTTGAAAGGCATTATCTTTTGCTTAAGCGTTCTGTTGTGGTTAATCATCTCTCAGGCAGGAACTTGAAATGTGAAAATAATCCAGCGATGGCAGAACAAGGTGATCATGGGTATAGCACCTCCTCCCTCAAATCAGCTTGGTCTGatttgtatgtgtatatgtaggtgggtgtgtgtgtgtgtagactgaGAGAAATCcccaaaagtaaattttaatatTGACCTCAATGCAGTGCCCATCACAAATCCCCCACTGTTCATCAggaaagaccaaaaaaaaaaagataaaaacaaaagcaagaaaAAGGAGGTCTTCCAACCAGACTCAAATGAATCATTTGACTGGCTTTGATTCAGATTCATTTCTTCATCCACTGATTTGAAGTCAGGTTTAGCTTTCTCTGGTAgttgtgctggtggtggtggttggggGAGGTGTTTAAGGTGGGGACAGTGGCACTTGGGTCAAAAGGGTCTGGGTTCATAGATCAGGCCTGGGGCCACGTCTACAGGTCGTCGCTCTCCACCAGGGTGCCGGGGGGTAGAGGGCTGGAGTCAGGGAAGAAGGCTGCCTTCACGTCGAGGCCCCGCTCCGTCAGGGCAGCGTAGCGGCTGGCTGAGGGACGCACCTTCTTCGGCTTAGGGGTGTTTGGCTGCTGCCATTGAGTGTGTACGTCCAGTCGTGCTGTGCTAGACACAATGCCAGCTTCGTTCTTGGCTGAGACAGTGTACCATCCCGCGTCTTCCTTCAAAGCCGGCTGGATTATCATGCACAGGTATCCAAAGTTGTcctggtgcatgCTTATTCTGTCTGTGTTGTGAGTGATGGACTCGTTCTCCTTCTTCCAGAAAATCTGAGGGAACGGGACTCCAGACACACGACACTCCAAGCGAACAGGGTAACCCTCTGCTACGCCGTGTTCTGAAGCTTCTCAATGAAGGTGGGGGCTTTGTGCATCTCTTTAGCTGCTACTATCAGCTCCAGGCTGAAGGAGTTCTGTCCGGCCCTGTTGCTGGCAATGCATGTATACACTCCTGCATCTCTGTTTGTGACTGGCTCAATAACCAGTGAATGGACTCCGTTTTCTCGCACCAGCATCTTATGGGCGGAGTCTGGGCGGATGGTCTGGCCGTTCAGCTGCCAGATCAGATCAGGGGTAGGCAGACCGCTTACCT
>TU34912
GAGAGCATTCCATATACAGGCACAGATTGGCGTGGAAATGgaagggaaaagaaaaaaaaaaaatacaataaaatcgTTCAGCATGAGTCCCATAATGCATTGGTGCTGAGACAGAGGTAActgctaaaaatattaaaaggcaAAGTGTAAATATGTAGTCGTATGTTTAGATACATATTATCAAAACAGAATTGCAAGAGATTTAActctgtgcatttttttttttttatgtcaatcTAACTGTCCAGGAAATCGCTCCACAAGTCATTAAGTACCAGAGTTGCGTGCAcattgtatgtatgtttatttattgatataatttttatttatttattattattaaattaaaaggtCTAAACAGGAAAGGTCTACATAATGTGTGATGGCAGTACACAGTCtgtcagttaaaaataaaaagcaatcagaaaattgagaaaatcactaaaataaatgtaagagtCTGTGTAAGTATAAATACTGTAACTCCACTGTTTTCCTTCCTCCTCTCCTGAAAAAGCATACAGTCACATACTGTGGTAAACACGCGTCCGCCATTGCTATAACCTGCTaactgcatctgtgtgtgtgtttgtgattccAAACTTCAAAAACAGAAGTGTATACCCAACACAATCATCAtcgttatcatcatcatcatgtagTTTGAATTCTTCGTAACCAAACACTTGTTTTGTCAAATGACACCacattcactctcactctctttcagtCAACTGAGTCAATCCCTTTCATTCTCTCCTCAACTAACTATTCATGCCTACAAGTAACCTCACACCACCTTCCCTATACCTTTCCTCACAGGCCTCTCCTATCAGTTTTAGAAATGAAAAAGTTGAGGAAACACCAGTCATTATTAAACCATCGTTCAACCTCACAACTCACATCAATCTCATCAAATCCAACTACAACACCACCTCACCCTTCCACTCCCTCAAGatcaagaaaaaaatttatatatatatatataaggcccGGCCTTGTGCAATATCTATGGCAttgtgctaatgctaaatcCAGACTGTGTGGATATCTGTGGTAGTGTGTTCAGTCTATCTACAGCTACGCCGCAGCGGTTCACATAGAAAAGTCCACTAAGTCCATTTCTGAACCCCCTCAACAGATTCCTAAGCCCCATATCTGACTCAAATCAGTCCTATCCAAGTTCCAATGCATCCCCAGCAATATCCACATCAATTCCACCTCTAAATCACTGCACGTTTACccaaaaatctctctctctctctctgctagaAATGAACAGACCATCTCATTTCCAGCAGCTTATAAATACAAAGTAAGGCACTGAGTAAATACTACGGAAGTATTAAATGTTGGCACCTTTGTAACACATGCAGAACTACATGCTACTTTATTTGAAAGGCATTATCTTTTGCTTAAGCGTTCTGTTGTGGTTAATCATCTCTCAGGCAGGAACTTGAAATGTGAAAATAATCCAGCGATGGCAGAACAAGGTGATCATGGGTATAGCACCTCCTCCCTCAAATCAGCTTGGTCTGatttgtatgtgtatatgtaggtgggtgtgtgtgtgtgtagactgaGAGAAATCcccaaaagtaaattttaatatTGACCTCAATGCAGTGCCCATCACAAATCCCCCACTGTTCATCAggaaagaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacaggacgTAAAAGGTCAGAGGTTCGGGGaaagtagtttttatt
>TU34914
GAGAGCATTCCATATACAGGCACAGATTGGCGTGGAAATGgaagggaaaagaaaaaaaaaaaatacaataaaatcgTTCAGCATGAGTCCCATAATGCATTGGTGCTGAGACAGAGGTAActgctaaaaatattaaaaggcaAAGTGTAAATATGTAGTCGTATGTTTAGATACATATTATCAAAACAGAATTGCAAGAGATTTAActctgtgcatttttttttttttatgtcaatcTAACTGTCCAGGAAATCGCTCCACAAGTCATTAAGTACCAGAGTTGCGTGCAcattgtatgtatgtttatttattgatataatttttatttatttattattattaaattaaaaggtCTAAACAGGAAAGGTCTACATAATGTGTGATGGCAGTACACAGTCtgtcagttaaaaataaaaagcaatcagaaaattgagaaaatcactaaaataaatgtaagagtCTGTGTAAGTATAAATACTGTAACTCCACTGTTTTCCTTCCTCCTCTCCTGAAAAAGCATACAGTCACATACTGTGGTAAACACGCGTCCGCCATTGCTATAACCTGCTaactgcatctgtgtgtgtgtttgtgattccAAACTTCAAAAACAGAAGTGTATACCCAACACAATCATCAtcgttatcatcatcatcatgtagTTTGAATTCTTCGTAACCAAACACTTGTTTTGTCAAATGACACCacattcactctcactctctttcagtCAACTGAGTCAATCCCTTTCATTCTCTCCTCAACTAACTATTCATGCCTACAAGTAACCTCACACCACCTTCCCTATACCTTTCCTCACAGGCCTCTCCTATCAGTTTTAGAAATGAAAAAGTTGAGGAAACACCAGTCATTATTAAACCATCGTTCAACCTCACAACTCACATCAATCTCATCAAATCCAACTACAACACCACCTCACCCTTCCACTCCCTCAAGatcaagaaaaaaattatatatatatatatatatatatatataaggcccGGCCTTGTGCAATATCTATGGCAttgtgctaatgctaaatcCAGACTGTGTGGATATCTGTGGTAGTGTGTTCAGTCTATCTACAGCTACGCCGCAGCGGTTCACATAGAAAAGTCCACTAAGTCCATTTCTGAACCCCCTCAACAGATTCCTAAGCCCCATATCTGACTCAAATCAGTCCTATCCAAGTTCCAATGCATCCCCAGCAATATCCACATCAATTCCACCTCTAAATCACTGCACGTTTACccaaaaatctctctctctctctctgctagaAATGAACAGACCATCTCATTTCCAGCAGCTTATAAATACAAAGTAAGGCACTGAGTAAATACTACGGAAGTATTAAATGTTGGCACCTTTGTAACACATGCAGAACTACATGCTACTTTATTTGAAAGGCATTATCTTTTGCTTAAGCGTTCTGTTGTGGTTAATCATCTCTCAGGCAGGAACTTGAAATGTGAAAATAATCCAGCGATGGCAGAACAAGGTGATCATGGGTATAGCACCTCCTCCCTCAAATCAGCTTGGTCTGatttgtatgtgtatatgtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaacttaCCTTTCATCCTCCCTCAAATCTTGGTAATGGCAGACATACTTTACAAACAGGCCACATTCAGGCAGATGCACATGACGCAGACGTCACAGGCCCAGAAGCCATGCACACATTCCAGCTGTCCCACAGCAGCATTACAGGAGCCACAACTACCAGCTCATCAGTCACATCTAACTAGATTATTACCTGTTACATAGCCGCACCTCTGTAAGCTACGCATTTAACCACTGTTCAAAAGAGAGTCATTTCTCCAACTCCTCCAGTAGTTCTGCATGTCTGTGTTTCATATTACATATCACACTAATCCCTTCACGCTGTAAGCACCACCTAGCCTGAACCTGCCCACTTTAGAAGCTCCACTTACTctaaattacactgtaaaacacgtGTTATCGCCTCCCAACCCTTTCATCACTGGTCAGTTTCTGTCAGACATTATTTGTGGGGTGAGCCATCGTAACAGCATTGCTGTGATCCACCACCCCAAACATATCCAGCCAAGAGCAGCTCTGTGGCCAGAAACTGACCAATGATGAAGAGTGTTAAGATGCAACACAACCAGCGTCTAAATATCAATGGGTGACAGCCAGACAGCTAGGTGAGCCTACACAGCTCCTACATTTTTGCTTGTTGCTTAGTCACCTGACAAAAAAGGCTAAACGACCATAATGACCCTAACTGAGTCCCCATGCTGTACACAGCACACCGGCCTTGCATATCAACACTGTTCAAGAAGCAAGAAGAATCTCGTATTTCCAAAAAGGCAACAAAACTTCCTAGCTTTCAATGGAATTCAAAGTACAATTTTAGAGCAtgtctattggtccattcatcataaaacAAGAATTACGGGCCAATATAGAACAGCTTCCAGATTCAAATGCAAAAATGGCAATGCAAGGATTCTTCACAAcagtgac

Function

symbol description
palld Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human PALLD (palladin, cytoskeletal associated protein).

NR:

description
PREDICTED: palladin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34910 True 2580 lncRNA 0.43 6 43876628 43885038
TU34912 False 1742 lncRNA 0.41 4 43868717 43885038
TU34914 False 2524 lncRNA 0.39 4 43866376 43885038

Neighbor

gene id symbol gene type direction distance location
LOC103035417 NA coding downstream 150178 43709728 ~ 43716198 (-)
LOC103035096 NA coding downstream 162407 43688898 ~ 43703969 (-)
LOC103034775 NA coding downstream 193386 43666847 ~ 43672990 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding downstream 201574 43599657 ~ 43664802 (-)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding downstream 510376 43350893 ~ 43356000 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding upstream 61941 43946979 ~ 43981364 (-)
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding upstream 317081 44202119 ~ 44219005 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding upstream 371413 44256451 ~ 44263193 (-)
LOC103040630 znf395 coding upstream 413909 44298947 ~ 44308698 (-)
LOC103028959 NA coding upstream 426216 44311254 ~ 44317837 (-)
G25903 NA non-coding downstream 382008 43484089 ~ 43484368 (-)
G25902 NA non-coding downstream 404222 43461669 ~ 43462154 (-)
G25874 NA non-coding downstream 503286 43360488 ~ 43363090 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 687157 43172973 ~ 43179219 (-)
G25797 LOC108411385 non-coding downstream 695162 43160421 ~ 43171214 (-)
G26009 NA non-coding upstream 36838 43921876 ~ 43924352 (-)
G26024 NA non-coding upstream 115950 44000988 ~ 44001408 (-)
G26025 NA non-coding upstream 130102 44015140 ~ 44015348 (-)
G26031 NA non-coding upstream 150489 44035527 ~ 44035757 (-)
G26032 NA non-coding upstream 152264 44037302 ~ 44037837 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 187514 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 349219 43495419 ~ 43517157 (-)
G25785 NA other downstream 754975 43098822 ~ 43111401 (-)
G25678 NA other downstream 1147987 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 1985952 41869024 ~ 41880424 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other upstream 5591 43890629 ~ 43899760 (-)
fkbp1b fkbp1b other upstream 884226 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 971061 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 997740 44882778 ~ 44885801 (-)
G26388 NA other upstream 1551071 45436109 ~ 45437585 (-)

Expression


Co-expression Network