cbr4 (cbr4,LOC107597475,LOC107665353)


Basic Information

Item Value
gene id cbr4
gene name cbr4,LOC107597475,LOC107665353
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43890629 ~ 43899760 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU34938
ATATGGCGATGCGCAGCGGGCATGGTTTGAAGGGAGAGTGAGTCCGTGAGAGGGTCGCTTACCTGTGAaccacagagaacacagagaacacagcacagcagtgacaGAGAGACTCAATGCAGCCCTGCTTCTGTGCGCCTGTATCTGAACACATGCAGTAAAGGACGCCGCTGTGCCTCTCAGTATCAACACCCTGCCCTCCTCACTCACCTTCACAAGACAGtcaggttCATGAGGTAGTGTCACCTGGAATGGTtgtcagttaacagctgtgctgaacttgtcaagagttctcatcaggaccaccctagAAAATGAAGACCAGGCGCTATCcgtgttgcacaggataagttcatcagagttaccagcctcagaaacggCAAGTCCCTtatatgttccttcatagtctggatgactttagtattaatttaaagtgtagaaaacaaaacacactggCTGGTACTGTAAGAACCTACAGACTCTGGAGTGGTAGCCCAGTGTTCACAAATATGTGCTTCATGGAAGAATC
>XM_007245330.3
GTCTGTTCAATATGGCGATGCGCAGCGGGCATGGTTTGAAGGGAGAGTGAGTCCGTGAGAGGGTCGCTTACCTGTGAaccacagagaacacagagaacacagcacagcagtgacaGAGAGACTCAATGCAGCCCTGCTTCTGTGCGCCTGTATCTGAACACATGCAGTAAAGGACGCCGCTGTGCCTCTCAGTATCAACACCCTGCCCTCCTCACTCACCTTCACAAGACAGtcaggttCATGAGGTAGTGTCACCTGGAATGGTtgtcagttaacagctgtgctgaacttgtcaagagttctcatcaggaccaccctagAAAATGAAGACCAGGCGCTATCcgtgttgcacaggataagttcatcagagttaccagcctcagaaacgGGGGTGATGTCCAAACTGGGTGTGGTGTTTGGGGGTTCCCGTGGCATTGGGTGTGCAGTTGCACAGCTGTTGGCACAAAGGGGGCACAGAGTTGTGGTGGTGTCCAGAAACCTGGAAGCAGCACAAACTAAAGCAAACTCACTTCCTGGAGGAGATCATGTTGGCATCAGCTGTGATGTTTCTAATGAACAAGATGTCCAGAGAGCGTTTGAGACCATTACTAAGACATGTGGGCCTGTGGGATACCTGGTTAACTCAGCTGGCATCAATAgagatGCACTGTTAATGAGGAGTAAATCTGAGGACATGGTCTCTGTTCTTCACACCAACCTGCTTGGCTCTATGTTTACCTGTAGAGCAGCTCTTCGGAGCATGCTAAGTAAAGGAGGTGCTATTGTCAACATAGGATCAGTGGTGGGTGTAAAGGGAAACGCTGGTCAGTGTGTGTACAGCGCCAGTAAAGCCGGCCTGGAGGGATTCACACGCTCCCTCGCCAGAGAGCTCGCCTCCAGAAACATCACAGTCAACTTAGTGGCTCCAGGGCTCATCCGCACAGACATGACGGCGGGTCTGAAGGAGGACGTGGAGGGGAGGAGGATTCCATTGGGTCGTTTCGGGAAGCCAGAGGAAGTAGCACAGGCTGTTCTGTTCCTCCTGGAGACACCTTATGTTACAGGACAGGTTCTGCTGGTGGACGGAGGATTACAGCTGGTCATGTGATGCCTAATTATCACCAGACCTGCCTGTAAACTGCTATTGATTGGACTAGAGGTGCATGTTGTTCTATTGAGAAATAGTGCTGTTCTTGGAAGAGGAGGACACGATGCCTTCTTTTGGGGCTACACTTTGTTGGCTGTGGaaacaaaaagtttaaaactCTGAATCAAAACttcattttgcacattttgcagCTCCACTCCTTGAGAATTTGATGGCCTACCATTCTACTGCACTATGAGAGCATCCAGTAATCATTTGTTCTCAGTCAGGTCTTTTCCGATCAAATCTCAGGGTTGGTCTATGGAAAACTGACTGACAGACTGAAGGAGTCTGGATGTTCTTTCTGATAAATTATTCAGGTATTAATGCagtttacagtaaattaat
>XM_007245332.3
GTTTGAAGGGAGAGTGAGTCCGTGAGAGGGTCGCTTACCTGTGAaccacagagaacacagagaacacagcacagcagtgacaGAGAGACTCAATGCAGCCCTGCTTCTGTGCGCCTGTATCTGAACACATGCAGTAAAGGACGCCGCTGTGCCTCTCAGTATCAACACCCTGCCCTCCTCACTCACCTTCACAAGACAGGGGGTGATGTCCAAACTGGGTGTGGTGTTTGGGGGTTCCCGTGGCATTGGGTGTGCAGTTGCACAGCTGTTGGCACAAAGGGGGCACAGAGTTGTGGTGGTGTCCAGAAACCTGGAAGCAGCACAAACTAAAGCAAACTCACTTCCTGGAGGAGATCATGTTGGCATCAGCTGTGATGTTTCTAATGAACAAGATGTCCAGAGAGCGTTTGAGACCATTACTAAGACATGTGGGCCTGTGGGATACCTGGTTAACTCAGCTGGCATCAATAgagatGCACTGTTAATGAGGAGTAAATCTGAGGACATGGTCTCTGTTCTTCACACCAACCTGCTTGGCTCTATGTTTACCTGTAGAGCAGCTCTTCGGAGCATGCTAAGTAAAGGAGGTGCTATTGTCAACATAGGATCAGTGGTGGGTGTAAAGGGAAACGCTGGTCAGTGTGTGTACAGCGCCAGTAAAGCCGGCCTGGAGGGATTCACACGCTCCCTCGCCAGAGAGCTCGCCTCCAGAAACATCACAGTCAACTTAGTGGCTCCAGGGCTCATCCGCACAGACATGACGGCGGGTCTGAAGGAGGACGTGGAGGGGAGGAGGATTCCATTGGGTCGTTTCGGGAAGCCAGAGGAAGTAGCACAGGCTGTTCTGTTCCTCCTGGAGACACCTTATGTTACAGGACAGGTTCTGCTGGTGGACGGAGGATTACAGCTGGTCATGTGATGCCTAATTATCACCAGACCTGCCTGTAAACTGCTATTGATTGGACTAGAGGTGCATGTTGTTCTATTGAGAAATAGTGCTGTTCTTGGAAGAGGAGGACACGATGCCTTCTTTTGGGGCTACACTTTGTTGGCTGTGGaaacaaaaagtttaaaactCTGAATCAAAACttcattttgcacattttgcagCTCCACTCCTTGAGAATTTGATGGCCTACCATTCTACTGCACTATGAGAGCATCCAGTAATCATTTGTTCTCAGTCAGGTCTTTTCCGATCAAATCTCAGGGTTGGTCTATGGAAAACTGACTGACAGACTGAAGGAGTCTGGATGTTCTTTCTGAT

Function

symbol description
cbr4 Predicted to enable 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process and protein heterotetramerization. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be part of oxidoreductase complex. Orthologous to human CBR4 (carbonyl reductase 4).

NR:

description
carbonyl reductase family member 4-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00059 fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase

RNA

RNA id representative length rna type GC content exon number start site end site
TU34938 False 529 lncRNA 0.48 2 43899036 43899751
XM_007245330.3 True 1495 mRNA 0.49 7 43890629 43899760
XM_007245332.3 False 1267 mRNA 0.50 6 43890668 43899727

Neighbor

gene id symbol gene type direction distance location
LOC103035417 NA coding downstream 174431 43709728 ~ 43716198 (-)
LOC103035096 NA coding downstream 186660 43688898 ~ 43703969 (-)
LOC103034775 NA coding downstream 217639 43666847 ~ 43672990 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding downstream 225827 43599657 ~ 43664802 (-)
mgat2 mgat2,LOC107728126,LOC107564584,LOC107704380 coding downstream 534629 43350893 ~ 43356000 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding upstream 47219 43946979 ~ 43981364 (-)
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding upstream 302359 44202119 ~ 44219005 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding upstream 356691 44256451 ~ 44263193 (-)
LOC103040630 znf395 coding upstream 399187 44298947 ~ 44308698 (-)
LOC103028959 NA coding upstream 411494 44311254 ~ 44317837 (-)
G25986 palld,LOC107755258,LOC106560254 non-coding downstream 5591 43866376 ~ 43885038 (-)
G25903 NA non-coding downstream 406261 43484089 ~ 43484368 (-)
G25902 NA non-coding downstream 428475 43461669 ~ 43462154 (-)
G25874 NA non-coding downstream 527539 43360488 ~ 43363090 (-)
G25802 myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423 non-coding downstream 711410 43172973 ~ 43179219 (-)
G26009 NA non-coding upstream 22116 43921876 ~ 43924352 (-)
G26024 NA non-coding upstream 101228 44000988 ~ 44001408 (-)
G26025 NA non-coding upstream 115380 44015140 ~ 44015348 (-)
G26031 NA non-coding upstream 135767 44035527 ~ 44035757 (-)
G26032 NA non-coding upstream 137542 44037302 ~ 44037837 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 211767 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 373472 43495419 ~ 43517157 (-)
G25785 NA other downstream 779228 43098822 ~ 43111401 (-)
G25678 NA other downstream 1172240 42717666 ~ 42718389 (-)
LOC111196586 LOC108262118 other downstream 2010205 41869024 ~ 41880424 (-)
fkbp1b fkbp1b other upstream 869504 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 956339 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 983018 44882778 ~ 44885801 (-)
G26388 NA other upstream 1536349 45436109 ~ 45437585 (-)
G26588 NA other upstream 2035393 45935153 ~ 45935622 (-)

Expression


Co-expression Network