G26039


Basic Information

Item Value
gene id G26039
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44107941 ~ 44202534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35012
ttttttttttttttttttccttttttttttctatggtgCACCGGGACATTTCCCAAATGCTCTGCAGCTCAAAGATGATCAGGATGAACAGAATCAGGTGTGTAGGACAGTGCACGTGGTGTGGAGAGTAGGGCTGGGCAATGAGACTTTAACATGATATCACAGTATTATTtcataatatagtatagtatttgAGATCAATAATACAAGCAGACCGAGCTTACAATGTAATATTACACTAAATCTAAAACACAAACTTTTTAGAACAGAATAGTTGCTAATTCACTAATTCAACTAATTGAATGTGGATCCTTAGATCATAAAACTGTAGAAGCACCAAATAAATCACACAGTTTTGTGATGAGGAATGTCTGAAGCTCCGCCTCTTAATCGGGCGTCATATAAAATGCAATTCCTACCTCTCTTACGTTCATGAGGAGTTTTCGCAACCCTCACCCACCCCTTCTTCTTTTAActcttttattaaaattacatcaCTAACATTTACATAAACCCAGCCCTCCCAGTCACAAAAGACTTTCAATGAAGTATCTGGGTGCAGCCTGTTAGAGCAAAGCAGGCTGGGAGGGGAGTGGCTTAAGATTTACTCATGCCCAAGTGAGTATACaataacaagtttttttttttaaatcattaatcATTGGTAATTATTTATGCAATTAAGGAGGTTATTTAATTAGAGTGTTGCAGCAGATGAAATGCTTGTAGTTTCAAATTCACATTAAATAGTGATCTAATCcaaatgttttacagttttcagAAATATTTCAATAGTGTCTGCCACTAGcgaatatacaggggttggacaatgaacacctgtcatttaagtgtgggaggtttcatggctaaattggagcagcctggtgtccaatcttcattaattgcacattgcagcagtaagagcagagtgtgaaggttcagttagcagggcacacaacattattggtAACATAAtaacagagttcaaaagaggacaaattgttggtgcacgtcttgttggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgcaggaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgcccaaatcacagcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccatcgggacaataaattattgtggtctaaaataaggtgtttcagtttcattgtccaacccctgtaatccTCAATGCAAAAATGGGACGAAGATCAAGTTAAACCATTCCTCAATATTAATTTAAAGGGCAGGAGTAGATTATGCTTTGATATACTAAGTGATAATGATTTAAACACTAATCAGCCTCAGATTCATGTAAGATAAAAGCCATCCCATTGCCCAGCCCTACTGGATAGTCCAAATAAGACTTCACACAAAACACCTGGGTACTAAAATACGTTCTTCTCTTTGACTTTTCCtgaacagttacacacagtatTGGATGACTAAAGATGTACACCTACACCTTCCTGATGTCGGTGACTTCGGAAATATACTTTGGCTCATGAAGCTTCCCACCACTTTTACCACCACATCAGCCAAACATGCACACTTTAGAATTCACTCACACATGTTCcacctacacacacttatacacacacacacacacacacacacacctcacttaGATATGCCTAAGCCTGTTTTCATGTACTCGTACACCACGTAGCTGATGCTGACGGCAGGAATCACTTTCATGAAGTTGGGTAGGATTCCACGGTAAAGGCCAAAAAAGCCCTCCTTCTCCAAGATCTTTCTCACTAGCTTTGACATCGATACCTGCTCCGCGCCCTCCATAGACG
>TU35019
ctcacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctcacttaGATATGCCTAAGCCTGTTTTCATGTACTCGTACACCACGTAGCTGATGCTGACGGCAGGAATCACTTTCATGAAGTTGGGTAGGATTCCACGGTAAAGGCCAAAAAAGCCCTCCTTCTCCAAGATCTTTCTCACTAGCTTTGACATCGATACCTGCTCCGCGCCCTCCATAGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35012 True 1954 lncRNA 0.40 2 44117024 44202534
TU35019 False 256 lncRNA 0.35 2 44107941 44202534

Neighbor

gene id symbol gene type direction distance location
prrx1 prrx1,prrx1b,LOC108439841,LOC107553451,LOC107698373,LOC108257538 coding upstream 51619 44041765 ~ 44056322 (+)
gorab gorab coding upstream 66497 44035824 ~ 44041444 (+)
mettl11b mettl11b,LOC107696087,LOC107698334,LOC107726432,LOC107732414 coding upstream 109131 43986654 ~ 43998810 (+)
LOC103028025 NA coding upstream 164531 43911833 ~ 43943410 (+)
trmt1l trmt1l,LOC107698377 coding upstream 198028 43899802 ~ 43909913 (+)
elp3 elp3,LOC107696156,LOC107698368,LOC107599080 coding downstream 16671 44219205 ~ 44254232 (+)
pnoc pnoc coding downstream 78588 44281122 ~ 44297719 (+)
LOC103041645 mcm3,LOC107732373,LOC107698330 coding downstream 136712 44339246 ~ 44347656 (+)
LOC103042260 NA coding downstream 154742 44357276 ~ 44359403 (+)
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding downstream 214904 44417438 ~ 44460259 (+)
G25956 NA non-coding upstream 183672 43921539 ~ 43924269 (+)
G25934 NA non-coding upstream 404244 43703183 ~ 43703697 (+)
G25925 NA non-coding upstream 434222 43666621 ~ 43673719 (+)
G25914 NA non-coding upstream 463915 43596038 ~ 43644026 (+)
G25893 NA non-coding upstream 590847 43516798 ~ 43517094 (+)
G26043 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107698369,LOC107726431,LOC107599081 non-coding downstream 53939 44256473 ~ 44263202 (+)
G26088 NA non-coding downstream 69760 44272294 ~ 44272504 (+)
G26107 LOC108439850 non-coding downstream 117452 44319986 ~ 44323822 (+)
G26121 NA non-coding downstream 162058 44364592 ~ 44367931 (+)
G26124 NA non-coding downstream 174791 44377325 ~ 44377527 (+)
LOC103033920 LOC108416105 other upstream 613625 43490323 ~ 43494316 (+)
G25880 NA other upstream 683035 43424392 ~ 43424906 (+)
G25879 NA other upstream 685895 43421771 ~ 43422046 (+)
rps29 NA other upstream 744497 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 845842 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 2325834 46528368 ~ 46549553 (+)
G26915 NA other downstream 4075733 48278267 ~ 48315894 (+)
G26995 NA other downstream 4353263 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 4376269 48578803 ~ 48618075 (+)
G27075 NA other downstream 4538680 48741214 ~ 48742439 (+)

Expression


Co-expression Network