G26083


Basic Information

Item Value
gene id G26083
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44195249 ~ 44198478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35079
TGTCATCCTtaccatttttattaaaataaccccctcccccaacacacacacacacccacacacatacacccatcCGTTTTCCTGAAGCGCACATGCATATACAAACTGAACCAGCTCACACAGATGGAAACTCATCACCTCTTTGTTCTCATTTCCACATTAACACTGACAAACACATGACTTTTAACACATGAGGATGATTGTCGTGTGCGAGCCGGTCACAGCGGTTCTCTCTCCTGATTTGATGAACAGTGCTCGAATATCTCAACATATCTGTGTTTGATTTGTCTCACGCTTTGGTCTGCTTGTTTTATAGCTTTAATTGAttgtaaatattaatagaaacatTACTGATTGTCTAAAGCAGTGCTTCTCAAGGTTAACATTTTGCTTCAACCCACCTAGTAAAACATATTGAAGTGGGAGGAGCTGAGAACCACTTTGAAAAGCACTGGTCTACGGTGTTTTAAAGCTGTAGTGAGAACCAGTTTGGCATGAAAATAACTAACTTTAATTGCTGAGCATAACACTAAAGGTATTGTGAGCTGAAAGAGCTGAAAGACTGAATCCACAACGTTTGTTTATGTAAAGTACAGTAGAGCACACCCAATTCCAAACAGTAGTGTACTATTACAGCTCATGCAGGTCTGGATTCAGCCTTTCCAGCAAGTCCAGCAAATATACTAGGCGAATAAAATGGCACACGGCAGActtgtacatattaaagtaacagCTGAGGTGTATTGCATGCTTAACAACTTAAATATTGAACAACTAAAAGACAGGAGTTAATCACTCCTGCTTTCTACAGTGTTATGACCAAAAAATGTCATTGATTGTCTCATCTAGGAgcaaaatcaaatatatattccAGGAAATACAAGTACAGGCTTTGGGtcaaacagaaaataataaaataaaaagctggtCCATTAACAATACGTACCAATAATACAACAAACAGGtcatataaaatattactacTCCTTTTGGaccaaaaatcattattttccaATAGTAACAATAGAAAAACGGAGGGGACAGTTACACATAACATAAACTCAGTCCTGGTCCTAGGGTACCTATGCAGTTTTACTGGGTTTACCCTGAACTAACATCTAACATCAGGGAAGCCACTCAAATGTGCATTGCACGAGTGACTCCAGGACCCAGGCTGTAAAATACTGCCACGTAATACGTAATAGAAATCTGAGAGAAATCTGAGAGACATTAAGGGGAATGGGAGGGGTCCAGCTTTGGCAGTAACACACAgttcctcttttttttgtattttttccccatttcagGGCTACAGTGTTCAAAAGTAAGCCACAGCAGGTTGCTTTCTCTTTGCTAATTCTGCATGGCAGCATTGCACCATCGCTCGCTGTTAGGTAACAATGTACAGTGTAACAGGTCTGGCTGATTATCagtagtattgtttttttattattaatatttctgtCTGCTCGCTATTGCTGGTTTGTCCTGAAAGTCAAACAAAACTTAAAGCATGaagatattatattattaggGCTTAAAGGCTTTGAAAAACCCAGGTctaaacatgctaaaaataGGGACGCACCGAATATCTAACAACTGAATTGGTTCGGTTTCATTTATACCAAACTGTGATGCTTTTTACGATGACACAATCAAATCACAACCAGAGTGCAGTGAGACGCTCTCTTTGTAAATGCAGCAAACATGACATGCTGGTGTTCGAGGATGACCCTAGAATGTCTATTTGCAGACGGTGTTGAGCTTTaagcaaaaagaaaattaaataaaaaataaaaaaataatttcggTGCATCCCTAAGCCAAAACCCAAGTATTTAACATATTAGGCTAAAGTCATTTACAATAATGGCACTGCATGCTTATGTACAGTTAAACATACTGTAAGGTTGacattaaatatacacaaaaatgtGGTGTACCACATTAGCCACCTTTAGACAAGTTTAAGATTGAAGATAGCAGCTTTTGCTTTTCATAGaccatatacaggggttggacagtgaaactgaaacacctgtcattttagtgtggggtgggaggtttcatggcttcAATagaagcagcctggtggccaatcttcattaattgcacattgcacctgtaagagcagagtgtgaaggttcaattagcagagtaagagcacagtgttgctcaaaatattgcaatgcacacaacattataggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggtgcatctgtgaccaagacagcaagtcttagtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgcaggaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgctcaaatcacggcagaattcagtgtgcacctcaactctcctgtttccaccagaatggtccgtcaggacaataaattaatgtggtctaaaaccaggtgtttcagtttcattgttcaacccctgtatatcgtTACAGTCATACTGACACCTcatactttatttgttttagctcatttagtgtttttagcatttaaaaaaaaaaaaaaaaaacagaaataaatcagAGATATGAGGTTTCGTTATGGCAGTGACGATATGTCCTGAAGCCAGTGGTCTGCAACCCTCCTGGGAGGAGCTACTTTCCTGCAGGTATTAAATACAACCCAAATCTAACAAACTCCATTCAGCCAGTCAAGGGCTTATGCTTTTCATAAAACTGTCCTGAAGATCTCCTCAGCACATCAGATGAGATCAGAAGAGAATTTAGTTGAACTGATTGCGAAGTACAGCAGGAGCTACATAACCTACGTATGACACCTGAGCCAAACAGCCCCGACATTCGTAAAGCTTTTAGTGTCTCATAACGGAACAGGAGCTCAGAGTTTACTCAGCACAGTggagacacagcagtgctgaatCCTGAGAGCGCACTCCCAGAGAACACCTCTAGAGGGCGCTGTGTGCCAAAGTACTGTGCGAGCTGTGGGACAGACCCAGCTCCACCGTGTCTCTGATTGGGAGGGGTCATAACACTTCCACCACCAGAGGAGCTGAAGATGGAGCTCTGGGCTTCACCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35079 True 3189 lncRNA 0.42 2 44195249 44198478

Neighbor

gene id symbol gene type direction distance location
kifap3 kifap3,LOC107726482,LOC107732413 coding downstream 213885 43946979 ~ 43981364 (-)
LOC103035417 NA coding downstream 479051 43709728 ~ 43716198 (-)
LOC103035096 NA coding downstream 491280 43688898 ~ 43703969 (-)
LOC103034775 NA coding downstream 522259 43666847 ~ 43672990 (-)
LOC103027377 LOC108416125,LOC101075333,LOC106560396 coding downstream 530447 43599657 ~ 43664802 (-)
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding upstream 3641 44202119 ~ 44219005 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding upstream 57973 44256451 ~ 44263193 (-)
LOC103040630 znf395 coding upstream 100469 44298947 ~ 44308698 (-)
LOC103028959 NA coding upstream 112776 44311254 ~ 44317837 (-)
LOC103041948 LOC108439850 coding upstream 123225 44321703 ~ 44324457 (-)
G26038 NA non-coding downstream 138950 44054940 ~ 44056299 (-)
G26032 NA non-coding downstream 157412 44037302 ~ 44037837 (-)
G26031 NA non-coding downstream 159492 44035527 ~ 44035757 (-)
G26025 NA non-coding downstream 179901 44015140 ~ 44015348 (-)
G26024 NA non-coding downstream 193841 44000988 ~ 44001408 (-)
G26084 elp3,LOC107732362,LOC107698368,LOC107553498,LOC107696156,LOC107599080 non-coding upstream 22535 44221013 ~ 44224273 (-)
G26154 NA non-coding upstream 178845 44377323 ~ 44377527 (-)
G26158 cdc42bpb,LOC106607646 non-coding upstream 243183 44441661 ~ 44444962 (-)
LOC111197214 NA non-coding upstream 415732 44614210 ~ 44615581 (-)
G26238 NA non-coding upstream 484710 44683188 ~ 44688822 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 295489 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 516387 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 678092 43495419 ~ 43517157 (-)
G25785 NA other downstream 1083848 43098822 ~ 43111401 (-)
G25678 NA other downstream 1476860 42717666 ~ 42718389 (-)
fkbp1b fkbp1b other upstream 570786 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 657621 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 684300 44882778 ~ 44885801 (-)
G26388 NA other upstream 1237631 45436109 ~ 45437585 (-)
G26588 NA other upstream 1736675 45935153 ~ 45935622 (-)

Expression


Co-expression Network