G26084 (elp3,LOC107732362,LOC107698368,LOC107553498,LOC107696156,LOC107599080)


Basic Information

Item Value
gene id G26084
gene name elp3,LOC107732362,LOC107698368,LOC107553498,LOC107696156,LOC107599080
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44221013 ~ 44224273 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35082
CAACGACAGCAATTCCACTGGCTGTGCGGATGGGCTTAGCTTTTAGTTTTGGTACAAGAGCCCGTCGGTAGTGGGGCGGCACTGCAGCAATAATGTCCACCAGGCGGGGTTGTGCAGAGAGGCCATACTTTGCTGAGGTTTTTGTCTTCAgtTTATTTAGGTCAATATCTTTCCCTTGCTCATGAGCCTCAACCAGCTGTTTGATGACATCTGCAATTGTCATCATCATCAGTTCAGCCCTGCTGAGCTCactcttcctcttcGGCTTTCCCATCTCGACGACAGCTCCTAAAGCGGCAAAGCTATAAAACTCTCCTTTCtcctgaaacaaaacaaaacaaatcacacTCAGTTCAGCAGCATATCCAACCGGCTAGT

Function

symbol description
elp3 Predicted to enable phosphorylase kinase regulator activity and tRNA uridine(34) acetyltransferase activity. Acts upstream of or within axonogenesis and somite development. Predicted to be part of elongator holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human ELP3 (elongator acetyltransferase complex subunit 3).

NR:

description
elongator complex protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35082 True 378 lncRNA 0.58 4 44221013 44224273

Neighbor

gene id symbol gene type direction distance location
slc25a24 slc25a24,LOC108439838,LOC107553450,LOC107732372,LOC107698372,LOC107696157,LOC107726490 coding downstream 2008 44202119 ~ 44219005 (-)
kifap3 kifap3,LOC107726482,LOC107732413 coding downstream 239649 43946979 ~ 43981364 (-)
LOC103035417 NA coding downstream 504815 43709728 ~ 43716198 (-)
LOC103035096 NA coding downstream 517044 43688898 ~ 43703969 (-)
LOC103034775 NA coding downstream 548023 43666847 ~ 43672990 (-)
LOC103039281 si:ch211-63o20.7,LOC108439852,LOC108258100,LOC107732427,LOC107726431,LOC107698369 coding upstream 32178 44256451 ~ 44263193 (-)
LOC103040630 znf395 coding upstream 74674 44298947 ~ 44308698 (-)
LOC103028959 NA coding upstream 86981 44311254 ~ 44317837 (-)
LOC103041948 LOC108439850 coding upstream 97430 44321703 ~ 44324457 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding upstream 135826 44360099 ~ 44367840 (-)
G26083 NA non-coding downstream 22535 44195249 ~ 44198478 (-)
G26038 NA non-coding downstream 164714 44054940 ~ 44056299 (-)
G26032 NA non-coding downstream 183176 44037302 ~ 44037837 (-)
G26031 NA non-coding downstream 185256 44035527 ~ 44035757 (-)
G26025 NA non-coding downstream 205665 44015140 ~ 44015348 (-)
G26154 NA non-coding upstream 153050 44377323 ~ 44377527 (-)
G26158 cdc42bpb,LOC106607646 non-coding upstream 217388 44441661 ~ 44444962 (-)
LOC111197214 NA non-coding upstream 389937 44614210 ~ 44615581 (-)
G26238 NA non-coding upstream 458915 44683188 ~ 44688822 (-)
G26240 NA non-coding upstream 474138 44698411 ~ 44698915 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 321253 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 542151 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 703856 43495419 ~ 43517157 (-)
G25785 NA other downstream 1109612 43098822 ~ 43111401 (-)
G25678 NA other downstream 1502624 42717666 ~ 42718389 (-)
fkbp1b fkbp1b other upstream 544991 44769264 ~ 44799505 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 631826 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 658505 44882778 ~ 44885801 (-)
G26388 NA other upstream 1211836 45436109 ~ 45437585 (-)
G26588 NA other upstream 1710880 45935153 ~ 45935622 (-)

Expression


Co-expression Network