G26216


Basic Information

Item Value
gene id G26216
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44735834 ~ 44736653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35266
GCTGGGTACAATCTTTTCCAAATGATTTCAATCGGTTTAATACACAGCTAAGCCCAAATGATCAAAACACCATTTAAAGCATGTGAGCTCTCACTGGATGAGAGCCAAAAGACAACTGTTTTACATCTTCTACTGCAAGCCCATCATACTGCATTCTTCAGAGGCAATGCTAATGACTAAAGAATACCATGCAGGTGAGGAGTCCATTAGACATTACAGGCTGAAGCGTGAATGCTACTACAGCACAACAGGGCAAAATAccttacaatattttacatagtataCTGTTTTCTATACGCAATCTATTTACCTTTTATCTATCAATATCTTTTTAATTCAAGGTTCCAATTAGATTAGAAGTTTCCCATACGTTTTTACCACACTTCCCTTCAGTTTTTATACATGATaacatacagtgccctccacAACATTTCTAATAAAGCCATACAGATACAAAGACAATACACATTGCATGTTACAGTGAAACACACAAACCACTAAATAGAATGGATTTAAAAGCTGTGCAAAGTTACTTACAGTACTTTCTTAGTCATTTTAACTCAAAGTTTTTAAGCGACACATACTGAACATGCTGagagagcatcactacaggacagtgtgtgaatgtgtatttGTTCATCTTACCTTATTTACTGACaggagataaaactagctccgttttaaaagtgtattttctggcttctacagctctgttccaaccatttaaccattcaaacctcttaattaaatgttttaagttcCAAAGAACTAGCTCTGACCCAATTTCTagaacaaacattttaaataacaccaaattttt

Function

NR:

description
heat shock factor-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35266 True 820 lncRNA 0.57 1 44735834 44736653

Neighbor

gene id symbol gene type direction distance location
LOC111197225 LOC108410507 coding upstream 8629 44710373 ~ 44727205 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 42662 44673130 ~ 44693172 (+)
LOC103046392 LOC103046392,LOC108414880 coding upstream 255930 44474148 ~ 44479904 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding upstream 263903 44460685 ~ 44471931 (+)
cdc42bpb cdc42bpb,LOC107684799,LOC106571112,LOC107746049 coding upstream 275575 44417438 ~ 44460259 (+)
wdcp wdcp,LOC107600078 coding downstream 66906 44803559 ~ 44808849 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding downstream 135811 44872464 ~ 44960236 (+)
LOC103023922 NA coding downstream 697266 45433919 ~ 45441256 (+)
LOC103022161 NA coding downstream 759028 45495681 ~ 45501646 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 823893 45560546 ~ 45570484 (+)
G26202 NA non-coding upstream 47431 44683188 ~ 44688403 (+)
G26124 NA non-coding upstream 358307 44377325 ~ 44377527 (+)
G26121 NA non-coding upstream 367903 44364592 ~ 44367931 (+)
G26107 LOC108439850 non-coding upstream 412012 44319986 ~ 44323822 (+)
G26088 NA non-coding upstream 463330 44272294 ~ 44272504 (+)
G26217 NA non-coding downstream 514 44737167 ~ 44738115 (+)
G26225 NA non-coding downstream 31504 44768157 ~ 44768487 (+)
G26226 NA non-coding downstream 32609 44769262 ~ 44770002 (+)
G26235 NA non-coding downstream 63331 44799984 ~ 44800646 (+)
G26280 NA non-coding downstream 117228 44853881 ~ 44854510 (+)
LOC103033920 LOC108416105 other upstream 1241518 43490323 ~ 43494316 (+)
G25880 NA other upstream 1310928 43424392 ~ 43424906 (+)
G25879 NA other upstream 1313788 43421771 ~ 43422046 (+)
rps29 NA other upstream 1372390 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1473735 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1791715 46528368 ~ 46549553 (+)
G26915 NA other downstream 3541614 48278267 ~ 48315894 (+)
G26995 NA other downstream 3819144 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3842150 48578803 ~ 48618075 (+)
G27075 NA other downstream 4004561 48741214 ~ 48742439 (+)

Expression


Co-expression Network