fkbp1b (fkbp1b)


Basic Information

Item Value
gene id fkbp1b
gene name fkbp1b
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44769264 ~ 44799505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35290
CGGAGTCCTGGCTGGTTTTCCGTgagctggtggtggtggtggtgggcggAGTGCTCCGTGGCTACAGCTCGGTGTGTGATCAGCAGGGCTACCTGCTCCTGTTTCTCTCTGGTTTACGGTGTAGGATCCTCCGTTTCACTACAATGGGTGTAGAAGTGGAAACAATATCTCCGGGAGACGGCAGAACCTTTCCAAAGAAGGGGCAGACGTGTGTAGTGCATTACATAGGAATGCTGCAGAATGGAAAGAAGTTTGACTCTTCACGAGACAGAAACAAGCCCTTTAAATTCAAAATAGGTCGACAGGAAGTCATCAAGGGCTGGGAAGAAGGAGTTGCACagaTGAGCCTGGGCCAGCGGGCGAAAATCACTTGCACTCCAGATATGGCATACGGAGCTACAGGCCACCCAGGGGTCATCCCCCCTAATGCCACCCTCATATTTGACGTGGAGCTGCTAAAGCTGGAGTGAGCCCTCATCTTAAGGAGCGGAGGAAACTCTAGCCCCTGCCCCACCAAGAAAACCCTTCCCACAAATTTAGCCTCTTCAACTAGACACACATATCCTCTGCTTTATTGCCAACCTGTGTTATATATGCCATCTAgctcttttaaacattttaaacacccCTAGTTTGATCAAGCGATGTTCTGTTTTCATATTAGGTTATAATTCCATTTAAAACGATGTAGAAGCGTCAAATCAGCATTAACTCAGCATTAGTATTCGGATTCAAACCACTGCCTTACTGTTTTTGAAGTGGAGGGAGGGTGTGTTGTATACGACAATTCTATATTTTGAGGGGCATTAATAACCACTGTCTGCATTACCacttttgataaaaaaatgtcCTGCTGAATGCACATGAAACAATAACAGTGTTGCTGTACttagtatattttatatgtatccCTCATGAAGCATTTGCTGCAATTATCATAGGAGTTCACAAACCTTTGCCTATAACTGGAATAAAGTGAATTCTGTACCATGGAGTGCTCTGGCTTCTATGAACATTTTATCAACCAActcttaataaat
>TU35291
CGGAGTCCTGGCTGGTTTTCCGTgagctggtggtggtggtggtgggcggAGTGCTCCGTGGCTACAGCTCGGTGTGTGATCAGCAGGGCTACCTGCTCCTGTTTCTCTCTGGTTTACGGTGTAGGATCCTCCGTTTCACTACAATGGGTGTAGAAGTGGAAACAATATCTCCGGGAGACGGCAGAACCTTTCCAAAGAAGGGGCAGACGTGTGTAGTGCATTACATAGGAATGCTGCAGAATGGAAAGAAGTTTGACTCTTCACGAGACAGAAACAAGCCCTTTAAATTCAAAATAGGTCGACAGGAAGTCATCAAGGGCTGGGAAGAAGGAGTTGCACagaTGAGCCTGGGCCAGCGGGCGAAAATCACTTGCACTCCAGATATGGCATACGGAGCTACAGGCCACCCAGGGGTCATCCCCCCTAATGCCACCCTCATATTTGACGTGGAGCTGCTAAAGCTGGAGTGAGCCCTCATCTTAAGGAGCGGAGGAAACTCTAGCCCCTGCCCCACCAAGAAAACCCTTTGCTTTATTGCCAACCTGTGTTATATATGCCATCTAgctcttttaaacattttaaacacccCTAGTTTGATCAAGCGATGTTCTGTTTTCATATTAGGTTATAATTCCATTTAAAACGATGTAGAAGCGTCAAATCAGCATTAACTCAGCATTAGTATTCGGATTCAAACCACTGCCTTACTGTTTTTGAAGTGGAGGGAGGGTGTGTTGTATACGACAATTCTATATTTTGAGGGGCATTAATAACCACTGTCTGCATTACCacttttgataaaaaaatgtcCTGCTGAATGCACATGAAACAATAACAGTGTTGCTGTACttagtatattttatatgtatccCTCATGAAGCATTTGCTGCAATTATCATAGGAGTTCACAAACCTTTGCCTATAACTGGAATAAAGTGAATTCTGTACCATGGAGTGCTCTGGCTTCTATGAACATTTTATCAACCAActcttaataaat
>XM_007229715.3
GTTTCATTACTCGGAGTCCTGGCTGGTTTTCCGTgagctggtggtggtggtggtgggcggAGTGCTCCGTGGCTACAGCTCGGTGTGTGATCAGCAGGGCTACCTGCTCCTGTTTCTCTCTGGTTTACGGTGTAGGATCCTCCGTTTCACTACAATGGGTGTAGAAGTGGAAACAATATCTCCGGGAGACGGCAGAACCTTTCCAAAGAAGGGGCAGACGTGTGTAGTGCATTACATAGGAATGCTGCAGAATGGAAAGAAGTTTGACTCTTCACGAGACAGAAACAAGCCCTTTAAATTCAAAATAGGTCGACAGGAAGTCATCAAGGGCTGGGAAGAAGGAGTTGCACagaTGAGCCTGGGCCAGCGGGCGAAAATCACTTGCACTCCAGATATGGCATACGGAGCTACAGGCCACCCAGGGGTCATCCCCCCTAATGCCACCCTCATATTTGACGTGGAGCTGCTAAAGCTGGAGTGAGCCCTCATCTTAAGGAGCGGAGGAAACTCTAGCCCCTGCCCCACCAAGAAAACCCTTCCCACAAATTTAGCCTCTTCAACTAGACACACATATCCTCTGCTTTATTGCCAACCTGTGTTATATATGCCATCTAgctcttttaaacattttaaacacccCTAGTTTGATCAAGCGATGTTCTGTTTTCATATTAGGTTATAATTCCATTTAAAACGATGTAGAAGCGTCAAATCAGCATTAACTCAGCATTAGTATTCGGATTCAAACCACTGCCTTACTGTTTTTGAAGTGGAGGGAGGGTGTGTTGTATACGACAATTCTATATTTTGAGGGGCATTAATAACCACTGTCTGCATTACCacttttgataaaaaaatgtcCTGCTGAATGCACATGAAACAATAACAGTGTTGCTGTACttagtatattttatatgtatccCTCATGAAGCATTTGCTGCAATTATCATAGGAGTTCACAAACCTTTGCCTATAACTGGAATAAAGTGAATTCTGTACCATGGAGTGCTCTGGCTTCTATGAACATTTTATCAACCAActcttaataaatattaataatatttggaactctttgaaaa
>XM_022686639.1
ggatgTTACGGGGACTCCCGTTTCATTACTCGGAGTCCTGGCTGGTTTTCCGTgagctggtggtggtggtggtgggcggAGTGCTCCGTGGCTACAGCTCGGTGTGTGATCAGCAGGGCTACCTGCTCCTGTTTCTCTCTGGTTTACGGTGTAGGATCCTCCGTTTCACTACAATGGGTGTAGAAGTGGAAACAATATCTCCGGGAGACGGCAGAACCTTTCCAAAGAAGGGGCAGACGTGTGTAGTGCATTACATAGGAATGCTGCAGAATGGAAAGAAGTTTGACTCTTCACGAGACAGAAACAAGCCCTTTAAATTCAAAATAGGTCGACAGGAAGTCATCAAGGGCTGGGAAGAAGGAGTTGCACagaTGAGCCTGGGCCAGCGGGCGAAAATCACTTGCACTCCAGATATGGCATACGGAGCTACAGGCCACCCAGGGGTCATCCCCCCTAATGCCACCCTCATATTTGACGTGGAGCTGCTAAAGCTGGAGTGAGCCCTCATCTTAAGGAGCGGAGGAAACTCTAGCCCCTGCCCCACCAAGAAAACCCTTTGCTTTATTGCCAACCTGTGTTATATATGCCATCTAgctcttttaaacattttaaacacccCTAGTTTGATCAAGCGATGTTCTGTTTTCATATTAGGTTATAATTCCATTTAAAACGATGTAGAAGCGTCAAATCAGCATTAACTCAGCATTAGTATTCGGATTCAAACCACTGCCTTACTGTTTTTGAAGTGGAGGGAGGGTGTGTTGTATACGACAATTCTATATTTTGAGGGGCATTAATAACCACTGTCTGCATTACCacttttgataaaaaaatgtcCTGCTGAATGCACATGAAACAATAACAGTGTTGCTGTACttagtatattttatatgtatccCTCATGAAGCATTTGCTGCAATTATCATAGGAGTTCACAAACCTTTGCCTATAACTGGAATAAAGTGAATTCTGTACCATGGAGTGCTCTGGCTTCTATGAACATTTTATCAACCAActcttaataaatattaataatatttggaactctttgaaaa

Function

symbol description
fkbp1b Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1B isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09568 FKBP1; FK506-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU35290 False 1040 TUCP 0.49 4 44769292 44799475
TU35291 False 1000 TUCP 0.49 5 44769292 44799475
XM_007229715.3 True 1079 mRNA 0.44 4 44769264 44799486
XM_022686639.1 False 1058 mRNA 0.44 5 44769264 44799505

Neighbor

gene id symbol gene type direction distance location
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 9059 44737167 ~ 44760205 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 193989 44525886 ~ 44575275 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding downstream 401424 44360099 ~ 44367840 (-)
LOC103041948 LOC108439850 coding downstream 444807 44321703 ~ 44324457 (-)
LOC103028959 NA coding downstream 451427 44311254 ~ 44317837 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 9321 44808826 ~ 44851093 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 183739 44983244 ~ 45315255 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 559405 45358910 ~ 45365846 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding upstream 641933 45441438 ~ 45448166 (-)
gpcpd1 gpcpd1,LOC107697181 coding upstream 651781 45451286 ~ 45465612 (-)
G26240 NA non-coding downstream 70349 44698411 ~ 44698915 (-)
G26238 NA non-coding downstream 80442 44683188 ~ 44688822 (-)
LOC111197214 NA non-coding downstream 153683 44614210 ~ 44615581 (-)
G26158 cdc42bpb,LOC106607646 non-coding downstream 324302 44441661 ~ 44444962 (-)
G26154 NA non-coding downstream 391737 44377323 ~ 44377527 (-)
G26278 NA non-coding upstream 53563 44853068 ~ 44853571 (-)
G26290 NA non-coding upstream 62679 44862184 ~ 44865066 (-)
LOC111197337 NA non-coding upstream 313033 45112538 ~ 45113961 (-)
G26345 NA non-coding upstream 343385 45142890 ~ 45160930 (-)
G26347 NA non-coding upstream 440396 45239901 ~ 45240218 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 869504 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 1090402 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 1252107 43495419 ~ 43517157 (-)
G25785 NA other downstream 1657863 43098822 ~ 43111401 (-)
G25678 NA other downstream 2050875 42717666 ~ 42718389 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other upstream 56594 44856099 ~ 44870690 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 83273 44882778 ~ 44885801 (-)
G26388 NA other upstream 636604 45436109 ~ 45437585 (-)
G26588 NA other upstream 1135648 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 1492582 46292087 ~ 46292806 (-)

Expression


Co-expression Network