G26280


Basic Information

Item Value
gene id G26280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44853881 ~ 44854510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35342
TGGGAGGGTTAGTGGCGtcattttttaaaccaaaaataatGCACTTAGTCTTATTAGTGTTAAGACGGAGATGGAGGTTTTGAAAGGACTGCTCAATGGAGGTGAGGCTAAGTTGAAGTGTAGAAGCTGCAGAGTGAAGTGAGGGACCAAATGAATATAGAATGGTATCATCAGCATAAAGATGTATATGTGAATTACCAGCAGCTTTGGCTACATCATTAATGTAGATAGAAAACAAGGTTGGACCCAGAATGGAACCCTGAGGTACACCTTTAAATATGGCTAGTGGCTCGGACAGAAAGTTTTCTGTTTTCAGCTGCTGAACACGGCCTACTAAATAGCTGGCAAACCAATCACAGCAGGAGGTGGACAAACCAATACTAGAAAGCCGACTTAGGAGAACTCTATGATCAACTGAATCAAAGGCTTTGGCTAGGTCAATGAAGGCAGCTATACAGGTCTTCTTGCTGTCTAATGCCGTGATAATATCATCAAGGACCTTTGTGACAGCGGTCATACAACCATATCCAGCCCGAAAACCAGATTGAAAGTCAGACAAGATGTTATTTGAGGCAAGGAAGTAGCTTAACTGTTTATGGACCAGCCTCTCCATGACTTTGGCTAGACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35342 True 630 lncRNA 0.42 1 44853881 44854510

Neighbor

gene id symbol gene type direction distance location
wdcp wdcp,LOC107600078 coding upstream 45032 44803559 ~ 44808849 (+)
LOC111197225 LOC108410507 coding upstream 126676 44710373 ~ 44727205 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 160709 44673130 ~ 44693172 (+)
LOC103046392 LOC103046392,LOC108414880 coding upstream 373977 44474148 ~ 44479904 (+)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516 coding upstream 381950 44460685 ~ 44471931 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding downstream 17954 44872464 ~ 44960236 (+)
LOC103023922 NA coding downstream 579409 45433919 ~ 45441256 (+)
LOC103022161 NA coding downstream 641171 45495681 ~ 45501646 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 706036 45560546 ~ 45570484 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 761052 45615562 ~ 45785454 (+)
G26235 NA non-coding upstream 53235 44799984 ~ 44800646 (+)
G26226 NA non-coding upstream 83879 44769262 ~ 44770002 (+)
G26225 NA non-coding upstream 85394 44768157 ~ 44768487 (+)
G26217 NA non-coding upstream 115766 44737167 ~ 44738115 (+)
G26216 NA non-coding upstream 117228 44735834 ~ 44736653 (+)
G26286 NA non-coding downstream 10633 44865143 ~ 44865684 (+)
G26322 NA non-coding downstream 256675 45111185 ~ 45112968 (+)
G26390 NA non-coding downstream 595499 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding downstream 669978 45524488 ~ 45528585 (+)
G26476 NA non-coding downstream 1212378 46066888 ~ 46067187 (+)
LOC103033920 LOC108416105 other upstream 1359565 43490323 ~ 43494316 (+)
G25880 NA other upstream 1428975 43424392 ~ 43424906 (+)
G25879 NA other upstream 1431835 43421771 ~ 43422046 (+)
rps29 NA other upstream 1490437 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 1591782 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 1673858 46528368 ~ 46549553 (+)
G26915 NA other downstream 3423757 48278267 ~ 48315894 (+)
G26995 NA other downstream 3701287 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3724293 48578803 ~ 48618075 (+)
G27075 NA other downstream 3886704 48741214 ~ 48742439 (+)

Expression


Co-expression Network