ubxn2a (ubxn2a,LOC107603085,LOC107750080,LOC107697178)


Basic Information

Item Value
gene id ubxn2a
gene name ubxn2a,LOC107603085,LOC107750080,LOC107697178
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44856099 ~ 44870690 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35356
CTTACGTCACGGGAATGGCTGTGTAGCTGTAGTGAGGAGAAAGGTGTGTTGCTGACAGAAACTTTGAAGTCCAGGACCCGACTGTGCTGGCTGTGAATGGACTCTCAGACCGatGGAACACAGGAGACGTGATGAAAGATATTGACTCAAGAGAGAGAAGCAAGGATGGCCCATGCTCTTAGGTGTGATGGTGCTCAAAACGATGATGACGAGGAGGAGGAGACCGAGACCCCCATGAGGCCCAGTTTCTCTGTAGAGGACCTTCTAGATGAGGTGGAGAAGATTGGGAGTGTCTCCACGGGTGGAAAAAagGTGGAGATTGTTGTAAGACTGTGGAAAGATGGCTTCACTGTGAATGACGAGGATTTTCGCAGCTACTCCTTGGAAGAGAACCAGGACTTTCTCGAAGCCATTAAACGAGGGTAGGGCTGTTCATGTCTGACAACAATTGATGTGAATCACTTTGTTCCCAAATTATACTTGCATATTTACATTGAAGAAAAATTTGCTCCCATTTTTCATAAGCTGAACTCAAGAGTCTAAGACTTCTCCTATGTACAAAAAAGGCCTTTTTCTCTCAAAGTTTGTTCACAAAACTGCACATGTGACAAAACTGTGCATATCCTGAGTGACCTTTTCTTATGGCCAGCCCAAGATACACCTGTGTAATAATCACTGTGTCTAATCAGCATCTTAATTTGTCACACCTGTGACTGGTGGACGGTTTATCTCAGCAAAGGAGAAGTGCTCACTAAGACAGATTTAGACCAAAATTGAATTCAGCTCATAAAAAATGGGAGCAAAAGTgttgcatttatattttttaatcagtgtATATATACTAGACTTTTCTCTCGGTGTTAGATACATAAATCTACACTCACTGTCAAAAATAGTTGAACCCAAAATGAAACTATGGGGGCAGTTGTGTCAGACTTTTATAGAGTAACTCTGAATGGCAGCAGTGATAAGTCACACTTTTGTCTTAGTGAAGACAACCAACGAATCTGTGTGTGGGTAAGCCAAATGCTCTAAAGGTAAATCTAAATTTGTAAAGTGTATGTTGGCATATGAAAGGTGTGATTTATTCCACATCTTAGTAGGTGGCTTTTTAGGAATTTTATATGGAgagtaattgtttattttttttaaatactcacaatagaatgtgtgtgtgtatatatatatatatatatatatggcaataAAACAATATGTAAACAGTAAGCATTACATAACTTAACCATATACAGAAAAAGTATTTACAGACCCATTCAGAGTCTAATTCATCTAATCACCCAGTGACCCTGGTAGTGATCAACCGATATATATCAGCCTGGATCATTAGCTTAAAAAAGTGTTGTTTAATTTTGCGTGCGTGTATGCATTTTTCTTGACGCGGCTCCGAGACAAAGTGGATCAGATCTTTCGCGCTGCGTGGGGAG
>XM_022686654.1
ATGGGTGGGCGCTTACGTCACGGGAATGGCTGTGTAGCTGTAGTGAGGAGAAAGGTGTGTTGCTGACAGAAACTTTGAAGTCCAGGACCCGACTGTGCTGGCTGTGAATGGACTCTCAGACCGatGGAACACAGGAGACGTGATGAAAGATATTGACTCAAGAGAGAGAAGCAAGGATGGCCCATGGTGTGATGGTGCTCAAAACGATGATGACGAGGAGGAGGAGACCGAGACCCCCATGAGGCCCAGTTTCTCTGTAGAGGACCTTCTAGATGAGGTGGAGAAGATTGGGAGTGTCTCCACGGGTGGAAAAAagGTGGAGATTGTTGTAAGACTGTGGAAAGATGGCTTCACTGTGAATGACGAGGATTTTCGCAGCTACTCCTTGGAAGAGAACCAGGACTTTCTCGAAGCCATTAAACGAGGGGAACTGCCTTTGGAGCTGGAGGGGAGAGCAGAGGACGAGGAGTTGGAGGTCAACGTGGAGGACATGAAGGATGAAATTTATGTCCCaaagaagaagccttttcttcCATTTACTGGTAGAGGATATAGACTGGGCAGcgtgGCGCCACGGGTGGTGGCCAGGTCTCGGTCAATACACGAGGACTGCTCAGTACCTCCCGTCCCTCCAGTGCCGGTGGACGAAAGCCTGCCTATCACCTCCCTGCAGATTTGGTTGGCAGACGGCCGGCGGCTCGTCCAGaggtttaacctcactcaccgAATCAGTGATGTCCAAGACTTTGTGGAGAAGGCCCAGTGTACAAGCTCACCATTTATCTTAACCACATCTCTGCCTTTTCGGGAGCTGACAGAGGGTGGACTGAGCCTGGAGGAGGCTGACCTGACAAATGCAGTCATTGTCCAGCGGCCACTCAACACACAAGCACCTTTTGGTCACTCCTGACTGAAGATATCTGTACTaaaagtgtgcagatctgttggTCACCACTTTGATCACCTTAAAGCATGGAGATACCAGTTCATAGACTTTCCTGACAACAACAACTCCcagtatttaaatgttaaaaagctGCTTAAAAGTCCTAATCATCTCAGACCTCTCCATTCATCAGTCCAGTGTGAAAGTGCAGTTAAGAACTCAATGACACTGATGAATGCGAGAAGGACAGTGATGAAAGAAACCCCCCTCACTCTTACcttgcattttcatttttcagaagGAAGGCAATAATCGGTACCTGCTGGCCTGCTAATcatgtgtaaatgctgcataTAGCTTGAAAACTGCAGGGAGTGCAGTTCTTATTTCTGACTGTCATTATCTATACTTCCCTTGCTGGATGCCTTGGCCTCCTCTGATGCAATGCAGTACGCACAAGCCACGTATTTAATATCAGCGTTCAATAAATGTCTCAGAAACTGCTGTCTGAGTGGTATAAATAATCAGACAGCACTTCTGTGTTTATCACAGGCTTGATTGCATTTTGCCTTACCAGAGCGGTGAGACTTCTGTTGTTTGTGTTGAAATGTTTGCTGATGTGTTGTAAGCATTTAAAGCAGAATTTATTTGCAATTGGCAGACATGTTAATGCACTTTGCCTAAGCGAGATGTTCTTTGTACAGGACCTCGGCTTGCAATAAatctattaaatttatttaaa
>XM_022686658.1
ATGGGTGGGCGCTTACGTCACGGGAATGGCTGTGTAGCTGTAGTGAGGAGAAAGGTGTGTTGCTGACAGAAACTTTGAAGTCCAGGACCCGACTGTGCTGGCTGTGAATGGACTCTCAGACCGCTCTTAGGTGTGATGGTGCTCAAAACGATGATGACGAGGAGGAGGAGACCGAGACCCCCATGAGGCCCAGTTTCTCTGTAGAGGACCTTCTAGATGAGGTGGAGAAGATTGGGAGTGTCTCCACGGGTGGAAAAAagGTGGAGATTGTTGTAAGACTGTGGAAAGATGGCTTCACTGTGAATGACGAGGATTTTCGCAGCTACTCCTTGGAAGAGAACCAGGACTTTCTCGAAGCCATTAAACGAGGGGAACTGCCTTTGGAGCTGGAGGGGAGAGCAGAGGACGAGGAGTTGGAGGTCAACGTGGAGGACATGAAGGATGAAATTTATGTCCCaaagaagaagccttttcttcCATTTACTGGTAGAGGATATAGACTGGGCAGcgtgGCGCCACGGGTGGTGGCCAGGTCTCGGTCAATACACGAGGACTGCTCAGTACCTCCCGTCCCTCCAGTGCCGGTGGACGAAAGCCTGCCTATCACCTCCCTGCAGATTTGGTTGGCAGACGGCCGGCGGCTCGTCCAGaggtttaacctcactcaccgAATCAGTGATGTCCAAGACTTTGTGGAGAAGGCCCAGTGTACAAGCTCACCATTTATCTTAACCACATCTCTGCCTTTTCGGGAGCTGACAGAGGGTGGACTGAGCCTGGAGGAGGCTGACCTGACAAATGCAGTCATTGTCCAGCGGCCACTCAACACACAAGCACCTTTTGGTCACTCCTGACTGAAGATATCTGTACTaaaagtgtgcagatctgttggTCACCACTTTGATCACCTTAAAGCATGGAGATACCAGTTCATAGACTTTCCTGACAACAACAACTCCcagtatttaaatgttaaaaagctGCTTAAAAGTCCTAATCATCTCAGACCTCTCCATTCATCAGTCCAGTGTGAAAGTGCAGTTAAGAACTCAATGACACTGATGAATGCGAGAAGGACAGTGATGAAAGAAACCCCCCTCACTCTTACcttgcattttcatttttcagaagGAAGGCAATAATCGGTACCTGCTGGCCTGCTAATcatgtgtaaatgctgcataTAGCTTGAAAACTGCAGGGAGTGCAGTTCTTATTTCTGACTGTCATTATCTATACTTCCCTTGCTGGATGCCTTGGCCTCCTCTGATGCAATGCAGTACGCACAAGCCACGTATTTAATATCAGCGTTCAATAAATGTCTCAGAAACTGCTGTCTGAGTGGTATAAATAATCAGACAGCACTTCTGTGTTTATCACAGGCTTGATTGCATTTTGCCTTACCAGAGCGGTGAGACTTCTGTTGTTTGTGTTGAAATGTTTGCTGATGTGTTGTAAGCATTTAAAGCAGAATTTATTTGCAATTGGCAGACATGTTAATGCACTTTGCCTAAGCGAGATGTTCTTTGTACAGGACCTCGGCTTGCAATAAatctattaaatttatttaaa
>XM_022686664.1
ATGGGTGGGCGCTTACGTCACGGGAATGGCTGTGTAGCTGTAGTGAGGAGAAAGGTGTGTTGCTGACAGAAACTTTGAAGTCCAGGACCCGACTGTGCTGGCTGTGAATGGACTCTCAGACCGatGGAACACAGGAGACGTGATGAAAGATATTGACTCAAGAGAGAGAAGCAAGGATGGCCCATGCTCTTAGGTGTGATGGTGCTCAAAACGATGATGACGAGGAGGAGGAGACCGAGACCCCCATGAGGCCCAGTTTCTCTGTAGAGGACCTTCTAGATGAGGTGGAGAAGATTGGGAGTGTCTCCACGGGTGGAAAAAagGTGGAGATTGTTGTAAGACTGTGGAAAGATGGCTTCACTGTGAATGACGAGGATTTTCGCAGCTACTCCTTGGAAGAGAACCAGGACTTTCTCGAAGCCATTAAACGAGGGGAACTGCCTTTGGAGCTGGAGGGGAGAGCAGAGGACGAGGAGTTGGAGGTCAACGTGGAGGACATGAAGGATGAAATTTATGTCCCaaagaagaagccttttcttcCATTTACTGGTAGAGGATATAGACTGGGCAGcgtgGCGCCACGGGTGGTGGCCAGGTCTCGGTCAATACACGAGGACTGCTCAGTACCTCCCGTCCCTCCAGTGCCGGTGGACGAAAGCCTGCCTATCACCTCCCTGCAGATTTGGTTGGCAGACGGCCGGCGGCTCGTCCAGaggtttaacctcactcaccgAATCAGTGATGTCCAAGACTTTGTGGAGAAGGCCCAGTGTACAAGCTCACCATTTATCTTAACCACATCTCTGCCTTTTCGGGAGCTGACAGAGGGTGGACTGAGCCTGGAGGAGGCTGACCTGACAAATGCAGTCATTGTCCAGCGGCCACTCAACACACAAGCACCTTTTGGTCACTCCTGACTGAAGATATCTGTACTaaaagtgtgcagatctgttggTCACCACTTTGATCACCTTAAAGCATGGAGATACCAGTTCATAGACTTTCCTGACAACAACAACTCCcagtatttaaatgttaaaaagctGCTTAAAAGTCCTAATCATCTCAGACCTCTCCATTCATCAGTCCAGTGTGAAAGTGCAGTTAAGAACTCAATGACACTGATGAATGCGAGAAGGACAGTGATGAAAGAAACCCCCCTCACTCTTACcttgcattttcatttttcagaagGAAGGCAATAATCGGTACCTGCTGGCCTGCTAATcatgtgtaaatgctgcataTAGCTTGAAAACTGCAGGGAGTGCAGTTCTTATTTCTGACTGTCATTATCTATACTTCCCTTGCTGGATGCCTTGGCCTCCTCTGATGCAATGCAGTACGCACAAGCCACGTATTTAATATCAGCGTTCAATAAATGTCTCAGAAACTGCTGTCTGAGTGGTATAAATAATCAGACAGCACTTCTGTGTTTATCACAGGCTTGATTGCATTTTGCCTTACCAGAGCGGTGAGACTTCTGTTGTTTGTGTTGAAATGTTTGCTGATGTGTTGTAAGCATTTAAAGCAGAATTTATTTGCAATTGGCAGACATGTTAATGCACTTTGCCTAAGCGAGATGTTCTTTGTACAGGACCTCGGCTTGCAATAAatctattaaatttatttaaa

Function

symbol description
ubxn2a Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A).

NR:

description
UBX domain-containing protein 2A isoform X3

GO: NA

KEGG:

id description
K24349 UBXN2A; UBX domain-containing protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
TU35356 False 1445 TUCP 0.40 5 44867094 44870679
XM_022686654.1 False 1628 mRNA 0.47 7 44856099 44870690
XM_022686658.1 False 1572 mRNA 0.47 6 44856099 44870690
XM_022686664.1 True 1635 mRNA 0.47 7 44856099 44870690

Neighbor

gene id symbol gene type direction distance location
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 5006 44808826 ~ 44851093 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 95894 44737167 ~ 44760205 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 280824 44525886 ~ 44575275 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding downstream 488259 44360099 ~ 44367840 (-)
LOC103041948 LOC108439850 coding downstream 531642 44321703 ~ 44324457 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 112554 44983244 ~ 45315255 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 488220 45358910 ~ 45365846 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding upstream 570748 45441438 ~ 45448166 (-)
gpcpd1 gpcpd1,LOC107697181 coding upstream 580596 45451286 ~ 45465612 (-)
trmt6 trmt6,LOC107593280 coding upstream 630961 45501651 ~ 45512516 (-)
G26278 NA non-coding downstream 2528 44853068 ~ 44853571 (-)
G26240 NA non-coding downstream 157184 44698411 ~ 44698915 (-)
G26238 NA non-coding downstream 167277 44683188 ~ 44688822 (-)
LOC111197214 NA non-coding downstream 240518 44614210 ~ 44615581 (-)
G26158 cdc42bpb,LOC106607646 non-coding downstream 411137 44441661 ~ 44444962 (-)
LOC111197337 NA non-coding upstream 241848 45112538 ~ 45113961 (-)
G26345 NA non-coding upstream 272200 45142890 ~ 45160930 (-)
G26347 NA non-coding upstream 369211 45239901 ~ 45240218 (-)
G26386 NA non-coding upstream 537743 45408433 ~ 45410036 (-)
LOC111191909 NA non-coding upstream 726897 45597587 ~ 45604161 (-)
fkbp1b fkbp1b other downstream 56594 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 956339 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 1177237 43675025 ~ 43678862 (-)
LOC103027084 LOC108416115,LOC103358919 other downstream 1338942 43495419 ~ 43517157 (-)
G25785 NA other downstream 1744698 43098822 ~ 43111401 (-)
G26295 atad2b,LOC107697175,LOC107603081 other upstream 12088 44882778 ~ 44885801 (-)
G26388 NA other upstream 565419 45436109 ~ 45437585 (-)
G26588 NA other upstream 1064463 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 1421397 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 1556727 46427417 ~ 46435925 (-)

Expression


Co-expression Network