LOC111197337


Basic Information

Item Value
gene id LOC111197337
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45112538 ~ 45113961 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35412
TAaaattcgacctgtcaaattcgactgctaaaatacaacgttcaaaattcgctgtcaacatccgggacacacaggatgagcaatcgattcagtcttcaatcgagccaacaaccagccaatcacatcacgctccgaagatcacgtgacaggtaGCGCCTCACGGCCAGCAGTAGGGCAGAGAACCGCTCAGCACGAGTCACAGCCCCCTCCGCTGCTCCTCTCGAGTagGTtgaaaagaagatgaagaagttTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaatacagaacacatgtaaacaactaaagaaaaacagaacatggcacaataaatcaaataaacacagcacagactgcatgaaattggatttctttatttgttctttaaaagtttggagaaaggaaacctgtGGAATACAAAAGAAACTTGAAAAATTACTGCATTTGATACATGGA
>XR_002652400.1
CGAGTCACAGCCCCCTCCGCTGCTCCTCTCGAGTagGTtgaaaagaagatgaagaagttTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaa

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process

KEGG:

id description
ko00071 Fatty acid degradation
ko00280 Valine, leucine and isoleucine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU35412 True 647 lncRNA 0.39 2 45112538 45113961
XR_002652400.1 False 282 lncRNA 0.38 2 45112711 45113769

Neighbor

gene id symbol gene type direction distance location
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 261445 44808826 ~ 44851093 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 352333 44737167 ~ 44760205 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 537263 44525886 ~ 44575275 (-)
LOC103042571 stmn4,LOC108439832,LOC108257558 coding downstream 744698 44360099 ~ 44367840 (-)
LOC103041948 LOC108439850 coding downstream 788081 44321703 ~ 44324457 (-)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 244949 45358910 ~ 45365846 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding upstream 327477 45441438 ~ 45448166 (-)
gpcpd1 gpcpd1,LOC107697181 coding upstream 337325 45451286 ~ 45465612 (-)
trmt6 trmt6,LOC107593280 coding upstream 387690 45501651 ~ 45512516 (-)
fermt1 fermt1,LOC106571740 coding upstream 401234 45515195 ~ 45531393 (-)
G26290 NA non-coding downstream 247472 44862184 ~ 44865066 (-)
G26278 NA non-coding downstream 258967 44853068 ~ 44853571 (-)
G26240 NA non-coding downstream 413623 44698411 ~ 44698915 (-)
G26238 NA non-coding downstream 423716 44683188 ~ 44688822 (-)
LOC111197214 NA non-coding downstream 496957 44614210 ~ 44615581 (-)
G26345 NA non-coding upstream 28929 45142890 ~ 45160930 (-)
G26347 NA non-coding upstream 125940 45239901 ~ 45240218 (-)
G26386 NA non-coding upstream 294472 45408433 ~ 45410036 (-)
LOC111191909 NA non-coding upstream 483626 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 619355 45733316 ~ 45742850 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 226737 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 241848 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 313033 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1212778 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 1433676 43675025 ~ 43678862 (-)
G26388 NA other upstream 322148 45436109 ~ 45437585 (-)
G26588 NA other upstream 821192 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 1178126 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 1313456 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 1404910 46518871 ~ 46525996 (-)

Expression


Co-expression Network