G26386


Basic Information

Item Value
gene id G26386
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45408433 ~ 45410036 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35468
CCAAGTTATAGGCACTACGAAGATCTAACTTAGTGAATACGGAAGCCCCACGTAATTGTTCTAGAGCTACCGGTACTAGAGGCAGTGGGTAGGGATACGTTTTAGTAACAGCATTAAGTTGGCGATAATCGATACATGGACGAAGACCTCCATCCTTCTTTTTAACAAAGAAGAAGGAAGCGGCTACTGGAGAGGTAGAATGACGAATAAATCCTTGAGCAAGAGCCACCTGCACATATTCCTCCATAGCACGTTCCTCAGTCTGAGTTAACGGGTAAATTCGTGATTTGGGAGGTATCTGATTATCAATAACCTCAATGGCGCAGTCATAAGAGCGATGTGGGGGAAGTTGGGTAGCACGAGACTTACTAAAAACTTCAGACAAATCTGCATAATCAGGAGGGATATGTGCAAGAGATTCCTGACCAGGACTTTCCACTGTAGTAGACTGGATCAGAAATTTGGGACCAGAAATACAGTGATCATGACAGTAAGAAGACCAAGAGATAATTTCACAATTTGACCAAGAAATCTGAGGATTGTGTCTTTTTAACCAAGGAAGTCCCAAAACAATCTGATAGTTAGTGTCCTTCATTACAAAAAACCTGATCTCCTCGGAATGCAGAGCACTGACGTTCAGCTGGACTGGTGTGGTGATATGGGATACGGCTCCTTGTCCAACTGGGGTCCCATCCACCGCAGACAGCTTCATCGGGTTTTCCAGGCACTGGAATCAGAAGTTGTCTAGCCAGCTGTTCATTAATAAAGTTCCCCTCAGCACCGGAATCTATCAGAGCTGGAAACACAAGAGAAGAGGACTGGCAGAACAGTATAACTGAGATAATAAATGATTTAGAGAACATGTCAGAGCTGGGTCGGCTTACCCTCTTAGCGTGTGGAACCCCTTCCACACGCTTTCCCGAGTCAGAAGCAGGTGGCTCATATGGACGGTCCGGGTTGCCATGGAAACCATGGGAGAGCCCACCGTTGGACGAGCCTGTCATATCCTTTTGCTGATCTCGGGGAAGGGCAGCTCCGACAATCGCGTAACATATGACCCGATCTGCCACAGTAGAAGCAAAGTCCAGCCTGCCGTCGTCGCATTCTCTCTTCTCTGGATAGACGGGTAGCGTCTACTTGCATGGGTTCTTCATCTCTGAGAGTGACCCGAGGATTAAATCCAGATGCGCGAGGAGTAGAAAACCGAGGAGTAGAGGTAACAGCTCTACGACCAGGTACAGAGCTCAGTTTCAGCTGATCAAGTCTGATGGCTAGAGATATCAGTTCGTCCAAGGATAATCCATCGTCCTTGCAAGCTAATTCAGCTAAAATATCAGCTCTGAGTCCATTCCGAAACATAACTCTTAACGCCGGTTCATTCCAGCCACTACCAGCAGCCAAAGTATGGAATTCAAGTGCAAAATCAGAAACAGGTCGATTCCCCTGACGTAACTGAACTAATAACTCCCCCTGTGATTGTCCATGATGAGGATGATCAAAAACCAGCCTGAATTCCCTGAGAAAGTGCTCATAAGTGCTATTTTCTATGCTTGACCAAATAGCCGTAGCCCAATCCAGAGCTTTACCAGTAAGACGTGATATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35468 True 1604 lncRNA 0.46 1 45408433 45410036

Neighbor

gene id symbol gene type direction distance location
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 42587 45358910 ~ 45365846 (-)
klhl29 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 93178 44983244 ~ 45315255 (-)
LOC103027014 mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 557340 44808826 ~ 44851093 (-)
mut mut,LOC107726757,LOC107697172,LOC107726528 coding downstream 648228 44737167 ~ 44760205 (-)
LOC103028241 runx2b,runx2,LOC103028241,LOC108410521,LOC108258149,LOC107678859,LOC107726745 coding downstream 833158 44525886 ~ 44575275 (-)
LOC103023605 napb,LOC106610947,LOC106599679,LOC103023605,LOC108411873,LOC108258064,LOC107756672,LOC107742707,LOC107593246,LOC107667620 coding upstream 31402 45441438 ~ 45448166 (-)
gpcpd1 gpcpd1,LOC107697181 coding upstream 41250 45451286 ~ 45465612 (-)
trmt6 trmt6,LOC107593280 coding upstream 91615 45501651 ~ 45512516 (-)
fermt1 fermt1,LOC106571740 coding upstream 105159 45515195 ~ 45531393 (-)
pak5 pak5 coding upstream 537992 45948028 ~ 46055938 (-)
G26347 NA non-coding downstream 168215 45239901 ~ 45240218 (-)
G26345 NA non-coding downstream 247503 45142890 ~ 45160930 (-)
LOC111197337 NA non-coding downstream 294472 45112538 ~ 45113961 (-)
G26290 NA non-coding downstream 543367 44862184 ~ 44865066 (-)
G26278 NA non-coding downstream 554862 44853068 ~ 44853571 (-)
LOC111191909 NA non-coding upstream 187551 45597587 ~ 45604161 (-)
LOC111197418 NA non-coding upstream 323280 45733316 ~ 45742850 (-)
G26563 NA non-coding upstream 433138 45843174 ~ 45844931 (-)
G26564 NA non-coding upstream 437581 45847617 ~ 45849592 (-)
G26612 NA non-coding upstream 656612 46066648 ~ 46067188 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 522632 44882778 ~ 44885801 (-)
ubxn2a ubxn2a,LOC107603085,LOC107750080,LOC107697178 other downstream 537743 44856099 ~ 44870690 (-)
fkbp1b fkbp1b other downstream 608928 44769264 ~ 44799505 (-)
cbr4 cbr4,LOC107597475,LOC107665353 other downstream 1508673 43890629 ~ 43899760 (-)
G25967 mcm3l,LOC108416133,LOC108258154,LOC107697457 other downstream 1729571 43675025 ~ 43678862 (-)
G26388 NA other upstream 26073 45436109 ~ 45437585 (-)
G26588 NA other upstream 525117 45935153 ~ 45935622 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other upstream 882051 46292087 ~ 46292806 (-)
naa30 naa30,LOC108270341 other upstream 1017381 46427417 ~ 46435925 (-)
G26695 prpf39,LOC107729032 other upstream 1108835 46518871 ~ 46525996 (-)

Expression


Co-expression Network