G26390


Basic Information

Item Value
gene id G26390
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45450009 ~ 45538939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35473
atgcatggcCCCACTGTTCTACAGAGTGGGATCAGAAAATTAAGAACCCCACTCTTAAACAGAACGCTTTAACACAGAGACATGGCCATACTAACACCCGGAGAACGTAAAGAGATTTACTGAGAATGTTCAGAGGCTACAGTACattctgtaataaaacagaATAGCATTGCAGTTTGCCCAGCTTTTATTCTGCTCCTTTTTACTCTACATTTTCTTACCCTGTGTAGTCATAGAGTCAAGTTTGGTACAGAGCAAGGTGGGGAATAAGGTTGACTTGAGACAGCTTACAGATATGCCTGTAATACATGAAGTACATTGTCCTCTGCTGCATTTAATATTTGAgattttacacaataaaaaaaagaaactgatgAGGACAAGTGAAACAATGTGAAAATCTGGATGTccatatttacaataaatacagtggCCATCTGCTTTCAGATTGGGTACTCAATACCCATTAGTGATtcaagaattttttttatatcaagtaaatatggtaaatacttacaaaacagagaaataaaaaaattaaaaagttgcacaaaataaaatgtaattagtgATGGCAGCCAAAATGGTGAAGCTGGAATTATAATAAAGCAAAGTTAATTTAAAGCACTTCAAATGTACAGCATATTGGCTAATTATAACAATAAATGACCACAAGAAAGCTTAGGTATAATCtgtctctttaaatatactctGACAAGACACTTCATTAAAACACCTTTGTTTCATATACTCTCTTTGTCGATTATATCAGCTACACTGACCATATAAAAGCTGTGGTGTTAAAATAACAGACTttgggtctTGTGATggtctcagcactgcagtaacactgacatggtgattatgttagtgtgtgttgtgctggtatgagtggatcagacacagcagtgctgctggtgtttttaaacaccttagtgCCACTGCCGGTTCAcaaaccagaaatatccagccaacagtGTGCTattacaaagtgctcctatatgatcagtggagttGAGAGGGGAAAAGAGAATGTAGAAACAGGGAGGTAATTTTAATGTTGGCTGATCAGTGTAATTAAACCAGCTACTCATACCCATAAACCATTAAATCATGCTTGTTTTGGCAAAAATACTGCTTATATTAAAAACCACACAGAGTTGAGGAGTGTGTTGAGTGATTTGTACTGCTTTGTAGAAAACATGGAATTTTGTATAAAGGTTGACTGAACGCTGCAAGCTCAGGATGAACTGAGGCCCGAGTCTGACTCGCCGCTGCCAACTTGAGTTTTACTCGAACAGGGTACTGATGTGCAGGGAATACTGTACGTGGAGCAGGCACAGCTTTTCAGAGTCTCCTCAGGAATTACCTCCTTCAAAGATACTTGCTCTTCTACTTTGAAGATGTTGGGCTGCTCGAGCTGGTCATCACAGATtctagaaaaagaaaagaagtaacacatataaaataaaataggccATTAGTTATTGAGGGACAGTAAAACGGAACAAAATTGCTTTAATTTACTAGGGAATAAGCTATTATCAGGTAGTCCAGATTTACAATCAAGCTTATTTTTTGCTAAGAAGCAAGTAGGAAATGTTTCTGCATGTGTTGCAGTAATATAAGCATTACACACCATGTTCTtctcattttacacaaaatatcAAATTTAGCAGATACAGCAACGTAGAAATTGATTACGtgaaaaagcataaaaaaactgtactacAGGACAAatcacaacaacaataatattcataaatCATACACACCACAGACATACACAAGTATACTCAATGATCTGCATTtcttttcatgcatttttcttCGCTCCTGTGATAGCACTATTCATAACAAGACCAAGGActtcttaaacaaaaaaaaaacaaaaaaagtttcatCCATAGCATTATGGATACCCAGTCACATAAattgtgtaaatgtaataaacatatGTGTACTAGGGCTGTAAATAAAAGCAGTCGCAtgaaaaatatactgtacacaccAATGACTGTATAAAACATGTACACTGTGTGTTTCTATTCCCTTCCTTTCtatagtaatgaagtaaaaattgTCTAGCATGTCAGATTTTCAATCAGATgctagacctgtggtggcttcatttTTGAAAGACACTGCACTGTTCATGCTTTCTCAAGTCATTGGTTTACACCATTAGTGTAAATACGGTAAGTTTACAAGCATGCATGCCTGAGAAACCTTATGCTGTAAAATGCTGGATTTGAATAGTACTGTGGGAGTGTTATTATAGTAACTATAGCCTTGTTTGTCCCCTGATCCTTCTGATCTATAATCATGTCTTTCCCTGTCGCTGCTACCTCTAAATACTGTTCAgtattaaagagaaaaaataaacaagaatttTAGCAATATTTTGACCCTCTATTTTACTGACATCATGGTGGAGTGGACAAGGACAATGTGAACACACTTCATGAACACATTACAGGCTGCATTAAGTACATCAGGGTGGCCACCTGAGGGAAACACTGTGAATTGCACAAATATTTGTTCAAATTAAATGGGTCACTCCTATGATGAGGTTTTTCCTGTTGTACCATGCTTATACTGAACTGTAGTGTGAACAAACTATGACATTGTGTACCATTACACCCCAAGGGTGTTTTAATGTGGTCTGCAAATTAAAGATTTTCATTAAGTTAAGGGACAAAGAATTACAATAGAGTGATTCATATAGCATTTTAAAAGCAACTGTGGGGAAAACGGACAATTCAGCCATAGGTTCATTCAGCAGAGAGTCTATGGCcatattaaacatgtttctaCACCATGCTGGGTTACAAGCCAAAGCAGGCATTTATCCTCAAACTGATCAAACAGTGGGGATAAAAACTGAGgataattaaatcattaattaaaTCATGCACCTGTCACTAAGCCAATGCTGAAAGAAAGCTTTGTGACTGTGTGAAAAGCAACTGATTATGTGCTGAAAGCTGTGTAATGAATGTGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35473 True 3006 lncRNA 0.36 3 45450009 45538939

Neighbor

gene id symbol gene type direction distance location
LOC103023922 NA coding upstream 8753 45433919 ~ 45441256 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding upstream 489773 44872464 ~ 44960236 (+)
wdcp wdcp,LOC107600078 coding upstream 641160 44803559 ~ 44808849 (+)
LOC111197225 LOC108410507 coding upstream 722804 44710373 ~ 44727205 (+)
LOC111191907 opn8a,LOC108410511,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding upstream 756837 44673130 ~ 44693172 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 21607 45560546 ~ 45570484 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 76623 45615562 ~ 45785454 (+)
plcb4 plcb4,LOC108258041 coding downstream 263815 45802754 ~ 45926101 (+)
lamp5 lamp5,zgc:165600 coding downstream 395535 45934474 ~ 45945832 (+)
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding downstream 530634 46069573 ~ 46076984 (+)
G26322 NA non-coding upstream 337041 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 584325 44865143 ~ 44865684 (+)
G26280 NA non-coding upstream 595499 44853881 ~ 44854510 (+)
G26235 NA non-coding upstream 649363 44799984 ~ 44800646 (+)
G26226 NA non-coding upstream 680007 44769262 ~ 44770002 (+)
G26476 NA non-coding downstream 527949 46066888 ~ 46067187 (+)
G26477 NA non-coding downstream 541366 46080305 ~ 46083403 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 816946 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 824945 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 871492 46410431 ~ 46410875 (+)
LOC103033920 LOC108416105 other upstream 1955693 43490323 ~ 43494316 (+)
G25880 NA other upstream 2025103 43424392 ~ 43424906 (+)
G25879 NA other upstream 2027963 43421771 ~ 43422046 (+)
rps29 NA other upstream 2086565 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2187910 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 989429 46528368 ~ 46549553 (+)
G26915 NA other downstream 2739328 48278267 ~ 48315894 (+)
G26995 NA other downstream 3016858 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3039864 48578803 ~ 48618075 (+)
G27075 NA other downstream 3202275 48741214 ~ 48742439 (+)

Expression


Co-expression Network