G26402 (fermt1)


Basic Information

Item Value
gene id G26402
gene name fermt1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 45524488 ~ 45528585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35490
GCCTTGCTCCATTAGAGAACTCGATGAGTCCAGCCACCTGCCAAGCACATTTATTTGTATCTTGGATTTTTCTCAGGTTCTTGTTTAAACCAGTTACATATTCATGACTGCTATGCTTTATATGTATAATGTGTAtggttaatatatatttactataataaCACAGTATATCTGTCAAAATGTGTTCAcaaaacactacactacattaaacactatctctctttctcttgctctctctctaaatGCAGCACTCACCCAGCATTGATTACAGATTTATCTTCCATACTAAGAGGTTGGTACATCTTGGCCAGCTCCTCTGGGGGCACGTTGGGCTGGCTGGAAGTCAGAGAGTTCTCCCCGAACCACAGGCTGGTGGCTGATGCGGGTGTTCCGTTCTCAGGGTCATAGGTCGCCGTCATGGTTTTACTGTAGAGACTGCTGCCAGCTACAGAGATTTTACATCCACATCCACTGTCATAACTGCATGCTTTTGCCGTTATCATTATTTGTTAAAACCTAGACATAATGCAGGCCTGAACAATTCTCAGACCATTAGACTGGTACCTACCTCAAAACCATGGCTAAAAGCCCCTTTATATAATTGTGCACTATTGTGTATTCTACATATggtgtgtagtatagtgtaaacAATTATTCTAATTATGTGAAGGCACCAAAGGCAGCGCACTACTGTACAggcatcattttattttattattgtttttacccAAAAGGAAAAGATAGAATTAAGATCTCTGATTGGAACAAtccaaaatctaaaatctatacACAAAGTAATTAGGATAGTTGCGTATTCATAAGTTTTCTAAACTCAAtggttttaaattaatttataatattttttgtggaGAAACTGTCTACTGTCTTGGGAAGacttttttattagaattttgAGCACttctgtaaggatttgattgcatgcaacggcaagagcattagtgattgaataaattgataaaattgaatggtcaccaccccacctcatccctaactctctgtaagtattggatggagcaccaacaATCCAGAGAACATagatccactgctccacagctcaatgggTATTATAGCCCTCTAACCTATGCCTGGCATTGATCATGGGACCAATGCATTCATGTTTAACTATTGGTAATAATACATCTCTACAGGGGCTAGAAatgctgtgtgtgcatttgtgccAGCAATGTGCACAATTCAAGtatctgaatgcattcattaaaagagGTGCTTAGAGAAacacagtgtgtatagtgtaatatTCTTCTCTGTTTCATACATTATATGACTGCCTGTGGAACAGACTGACCTATTAAAGATAATTTCTCAAAACTATGGATTTTCTAGGGCCATAAAATGTTCTAGAAATTCCATTTCAGTCACATTAACTGATCTCCACTGAGCAATAAGCCTACAACTCAGCAAAAACAAGGATGTAAGCAAAAAGTAGACAATGAAATGGTTGCAGTAAATCTCTGATAGCCCTGGGCAGATACCTGGTATCTGATGATGTATACGACACAGACTAAACAAAATCGttcattggaaaaaaaatgacaacCTTATGCACTGTCTTGCGCATTTGTACAGGTCTGGGCTATGCCTGCCTATAATAAAGAAACCTTGTATAATTCTCATTGTGTTCAATCccacagtaaacaaaacagacaCAGCTAAGTGTCAGCAACTACTACTAGTTATTtgcaattatttgttttttgtaaaaaaaactacagaaatttaaaagataatacagtatataaacaagGTATAAAGTGGGTTATAATAATCTTGGTTCTTTACCTGTTCCACTGATAACGTCCATGTCTATTATTTCATCTTCCTCCTGGTCCTTattcttgtcttttttctttttcttttttggatcATCTGGTGCTTTCAGGAGGGATAACTCCTCTGATCTTCTTATGTCTAAGAGCATGAGTGCTTTGCAAATTTCTTCCACAGCCTTGAAGACCACTGATGAGAAGCTGATGGTCAGTTTGATGGTCTTCATGTTGGGCAGCTGCAGCAACAGTGGCTTATGCTGGGGAGTAAAGCGTAGGTCAGCATCTGCTTGCACTCCATACTTATCCAGTGTCCAGTGGTTTTTCAACAGCCAGCAGTTCTTCTTTTCCCACCACAGGGCATGATCTGACCAGTTCTGAGGGGTCTCTGCCACAATGATCTTCTCCACGAGTTTGAGCATGAGTCCTCCAATGTGAAGATCTCCCTTAACCAGAATTTTAAACTTCATGCTCTCATCTCCTTGCCGCTGATCCACTTGGATCGACAGCTCCCATGAGTTTTGGCGCTCAGCAGCGGTGACCATGGCTTCAC

Function

symbol description
fermt1 Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within integrin-mediated signaling pathway. Predicted to be active in focal adhesion. Is expressed in several structures, including intestinal epithelium; median fin fold; non neural ectoderm; pectoral fin bud; and pectoral fin fold. Human ortholog(s) of this gene implicated in Kindler syndrome; telangiectasis; and vesiculobullous skin disease. Orthologous to human FERMT1 (FERM domain containing kindlin 1).

NR:

description
PREDICTED: fermitin family homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35490 True 2358 lncRNA 0.45 3 45524488 45528585

Neighbor

gene id symbol gene type direction distance location
LOC103022161 NA coding upstream 22842 45495681 ~ 45501646 (+)
LOC103023922 NA coding upstream 83232 45433919 ~ 45441256 (+)
atad2b atad2b,LOC107697175,LOC107667607 coding upstream 564252 44872464 ~ 44960236 (+)
wdcp wdcp,LOC107600078 coding upstream 715639 44803559 ~ 44808849 (+)
LOC111197225 LOC108410507 coding upstream 797283 44710373 ~ 44727205 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding downstream 31961 45560546 ~ 45570484 (+)
LOC103021983 plcb1,LOC108258091 coding downstream 86977 45615562 ~ 45785454 (+)
plcb4 plcb4,LOC108258041 coding downstream 274169 45802754 ~ 45926101 (+)
lamp5 lamp5,zgc:165600 coding downstream 405889 45934474 ~ 45945832 (+)
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding downstream 540988 46069573 ~ 46076984 (+)
G26322 NA non-coding upstream 411520 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 658804 44865143 ~ 44865684 (+)
G26280 NA non-coding upstream 669978 44853881 ~ 44854510 (+)
G26235 NA non-coding upstream 723842 44799984 ~ 44800646 (+)
G26226 NA non-coding upstream 754486 44769262 ~ 44770002 (+)
G26476 NA non-coding downstream 538303 46066888 ~ 46067187 (+)
G26477 NA non-coding downstream 551720 46080305 ~ 46083403 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 827300 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 835299 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 881846 46410431 ~ 46410875 (+)
LOC103033920 LOC108416105 other upstream 2030172 43490323 ~ 43494316 (+)
G25880 NA other upstream 2099582 43424392 ~ 43424906 (+)
G25879 NA other upstream 2102442 43421771 ~ 43422046 (+)
rps29 NA other upstream 2161044 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2262389 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 999783 46528368 ~ 46549553 (+)
G26915 NA other downstream 2749682 48278267 ~ 48315894 (+)
G26995 NA other downstream 3027212 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 3050218 48578803 ~ 48618075 (+)
G27075 NA other downstream 3212629 48741214 ~ 48742439 (+)

Expression


Co-expression Network