G26477


Basic Information

Item Value
gene id G26477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46080305 ~ 46083403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35587
ACATAATCTACAAAAAACTCTCAATGTATGatttttgtttagaatttatttgtgcgttactgctgcaaataagtatttgaacacctgtGAAAATCAATGTTAATATTTGGTACAGTAGCCTTTGTTTGGTCAAACGtttcctgttccttactagtgtggcaaaatgcaccttataatccagtgtgccttgtatatgaaaatagaccagaaaatagacgttcactgaaagtgtgccttataatctggtgcactttatagtgtgaaaatatgttatttgaggaataaaagaaaaaaatccaaataaagagagaattgtttactatgtatttattcattggAAGGGCTTTAGTGTGAAACAGTAGGAGcagagagagaatatgaaacTCACCTCTCAGAGGGTAATGGTTCATACATGAGTGGACAGAATGAGGAGAAGCGAAGCAGCGAGGCCAAAGAGTGGCTGAACACTGATGGAAAGGAAGATGAAAGGGCACAGAGGCCAGGATGATGGAGGAAGAGCGTCGGCGGTGCAAACCTTGATCAGACTGGCTCTCGGACGTCACACTGAAAGCTTGGACTGCCATCAGGGGGCGCTCATGCTGTTGGGATTGAGAAACTCCCTCAGGATGTAGACTGGATTTTACAGATACGGGCTGAGAGGCAGGGTGAGGGGACACGCTTTTAGCAGCTTCCATCTGATGTTCTGCAGTTCTTGCATAGCAGTCTttcaaagcagcagcagcagcttcagtaCTGTCTGTAGGAGACAATCTGCTGGAATGTTCTGAGACTGAGTTACTTGACCTGCCAAAGACCCGGCCCTTAGTGCTTTTAGGAGGCGGAGTCTGAGACCCACTATTGCTCAATCTGGATTCGCAGGGACCAGGCAGGGGCGTGGAAGGAGATGGCAGAAGAGGTGCAGCAGCATGAGATGGACTGGTAGGTGAGGCTGCAGGTCCTGAGCATGACGAGGCCTCACCACTAGCAACGCCCAGGTGAAGGCCATCTCCGATAGATGCAGCACGGCTGACCTTGGCTATGGAACTGGTTGTGGGGCTCATGTAGGAGCACGCTTTGGCGTGACGGTTGGTGGTAGGACTTTCCCAGGGCTGAGGAGAGGTGGAGCCTGAGGATGGGTGGTAGAGATGTCTGCTGGAATCACTTTTGGACATGATGAGCTGAGGCAACGGTGGCAGAGACTCTCGCTTCAAGCGGGACGGGGTTACAGACCTCCGatTGTCTCCTGTAAGATTTTGTGCGGACATTGATTTGAGAAGCAGTGCTGATTGCTTGCCCACTGGACTGGCCACTCTGCTGGGATGTGCCGCAAAAGCTTTCTTCCTCTTTAGCTTTGTGCACAGCTGTGGAGGATTACTCTGTGCATTCTTCTCGAAACCTGTGCTCTGACTCTTCTCCTCATGCAGGGGGCTTACTGCAGATATAAGGGGCTCAACTTCAGCACTGGGACCACTGGACATCCGGCTGGTCTTGGAGAGGAACGGGATGGGctttctaaaa

Function

NR:

description
PREDICTED: selenoprotein S

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU35587 True 1518 lncRNA 0.44 2 46080305 46083403

Neighbor

gene id symbol gene type direction distance location
LOC103025099 LOC108411733,LOC107564327,LOC107712203,LOC107712204,LOC107659822,LOC108258090 coding upstream 3321 46069573 ~ 46076984 (+)
lamp5 lamp5,zgc:165600 coding upstream 134473 45934474 ~ 45945832 (+)
plcb4 plcb4,LOC108258041 coding upstream 154204 45802754 ~ 45926101 (+)
LOC103021983 plcb1,LOC108258091 coding upstream 294851 45615562 ~ 45785454 (+)
LOC103028976 LOC103028976,LOC108410497,LOC107575557 coding upstream 509821 45560546 ~ 45570484 (+)
LOC103030371 NA coding downstream 49170 46132573 ~ 46134116 (+)
LOC103027027 LOC108444466 coding downstream 77248 46160651 ~ 46178257 (+)
LOC103027954 NA coding downstream 109626 46193029 ~ 46201498 (+)
LOC103028674 LOC108411639,LOC102297057 coding downstream 151276 46234679 ~ 46289280 (+)
LOC103029419 LOC108411685,LOC108258103,LOC101066055 coding downstream 208605 46292008 ~ 46300124 (+)
G26476 NA non-coding upstream 13118 46066888 ~ 46067187 (+)
G26390 NA non-coding upstream 541366 45450009 ~ 45538939 (+)
G26402 fermt1 non-coding upstream 551720 45524488 ~ 45528585 (+)
G26322 NA non-coding upstream 967337 45111185 ~ 45112968 (+)
G26286 NA non-coding upstream 1214621 44865143 ~ 44865684 (+)
G26522 LOC103043020,LOC108411620,LOC108258012 non-coding downstream 272482 46355885 ~ 46357866 (+)
G26529 NA non-coding downstream 280481 46363884 ~ 46409990 (+)
G26667 NA non-coding downstream 327028 46410431 ~ 46410875 (+)
G26679 NA non-coding downstream 396788 46480191 ~ 46480391 (+)
G26687 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 non-coding downstream 427882 46511285 ~ 46514839 (+)
LOC103033920 LOC108416105 other upstream 2585989 43490323 ~ 43494316 (+)
G25880 NA other upstream 2655399 43424392 ~ 43424906 (+)
G25879 NA other upstream 2658259 43421771 ~ 43422046 (+)
rps29 NA other upstream 2716861 43360469 ~ 43363444 (+)
LOC103026014 LOC103026014,LOC108411425 other upstream 2818206 43259620 ~ 43262099 (+)
fau fau,LOC108411505,LOC107704371 other downstream 444965 46528368 ~ 46549553 (+)
G26915 NA other downstream 2194864 48278267 ~ 48315894 (+)
G26995 NA other downstream 2472394 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 2495400 48578803 ~ 48618075 (+)
G27075 NA other downstream 2657811 48741214 ~ 48742439 (+)

Expression


Co-expression Network