G26695 (prpf39,LOC107729032)


Basic Information

Item Value
gene id G26695
gene name prpf39,LOC107729032
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 46518871 ~ 46525996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU35877
AGAAACTTCCAAGCATTGTAAGCGTTTTATCTTATGCTGAAATGGCTTGACATGCTGTTCATGTCAGTACCCTGGCTGTCTACAAGAAACTGACAATATAAGCTATTACggtgaaaataatacaaatggtTAAGACAGTAcgaatttcacaaaaaaaaaaaatgacagactCAAGGATACCAATCTCTTTATTATGAAATTCAAAAGGTCAAACTaaaaacttcattttacttTGGGCTCTGAAAACATGAAGACATCACATTAAGGAGAGCAGAGAAAGTTAAAGAATTAAAGTTGAGATTTTCCATACAAAAACGGTCAAACTACCAAGTTTCCAAAAAGAGACCACGCTAAATTAGGCTAAAATTAAACTTATCTGCACATTTTCCACAGAAGAAAAACTCATTTGCAACACATactcaaaaaacacaaagtaaactgtcAAATGACTGAGAATGTCATGAGAATCAGTAAGAATGGATAAAAAGGACAAAGTTCAATTATACTTCATGTCATCATGTGGGGGGTGGGGGATAGTACTGGTTATACTGATACTGGCCATACTGGCCCCAGGAATTTTGGGTTCCCCAGGCGTTGTACTGCTGATACCAGTTGTTATAGTTGTACCCATGGTTGGCTTGCATGTCTGGAGCCACCTGACCCGATGCTCCAGAGGCATCATCCACACGCTGTCTTTTTGAGTCTGGTTCTTGAGACCCAttctctgcttttctttttgaTGAGTCTTGTTCTTTCAGAAGTTTCTGGTGTTGTTCATACGCAGCCACAAGCacaTTTATGTCACTGCCAAAATCTTCTAGAAAGTCCACTTTACGCTGTGAGAAAGTGATACGTGACTCCAGTTGCATTGAACTGTTGATGGCACGATCAAAGCACGCCAGGATTTCTGCTTCATTTTGCTGTACATCTCCACTGTACTCCAACTCCAGCAAGTTTAGGTACAGCTTAGGACTGGTCTCATCTTTTTCTATGGCTTCTAGCAGTACTTTTCTAGCCTTTCCAATACTCCGCTGCACTTTGAGGAGCTGTCTTGCTAGTTTCACAGAGTAGAATGATGATTCTGTTGCATTTTTTCCATTCTGAATAGCGTCCCGCAGGAGTGTCTCCGCTTCATCCAAATTACCATGTCGACGCTCCAGACTCACCCGACGTAGTCTCACCATGGCCAGGCCTGGAACTGACTCCTCTAGGCTTTTCAGGATGCCTCGTGCTTCCTCAATGTTCCCTAAAAAACAGAAATCTTAACCTTTA
>TU35879
TTGCACTCACTTCTTGTTCCACATACTGCAGAAGGTAGACCCATCCATTAAAATCTTCAGGGTTATCCTCGACTACTTTGTATAGCCGGTCAAAGTCAGAAGGCATTGCCTCTTTTCCCTCAGCAGCATCACCCGCCGCATCACCCACAGCTTCCTCACTTTCTTCTTTGGATGCATCCTCAAGTTCCATGTTCGCAGGACTTTCGGAACTGTCCAACTCGGTCTGCATTACAGAGCTCAGCTCTGCAGTTTGTCCATTTGTTTCAGCAACACAAACAGAATTTTCAGGTTGTTCAGAGGCATTTTGTTCAGGAACATCAGATTTTTGCTCGACTGATTTTAAAGGCTCATCCACTGAGAACTTCTCCCCCTCTTGTCCTGCAACCTGCTGGCTTGCAAGAGCAGCAAGTGTGCCAGGAACTTGGTCCATTGTCCACTGAGCATCCTGGGTTAAGTTGGGAAGGTTTGAAATGAAACTATCCCCTGCACCTTCCACAGCATTAGAGTCCCCATTGTCAGGGGTGTCTGCATTAACCATCCCCGTCATGGGCTCGTCTGAAAGATCCAGGTCAGAGTGTTCCATGAAACGTCGCTGTGTCCCTGGTTTATCTGCACTTTATCTGAACTTATCGTTCCGACAACATGTGGTCGCGGCAGCTCGCTCTCATTCTACACACAGCGACGCTGAAGGGCAAGAATGTTCTCCGCATGCGCACTTGATGGGCAGCTCcaggtgtgggtgtgggtgtgctGGCGCGGCTTGTATTTGTTTCTGCTGCTTGGGGCCTCTTTTTAAACCGCCCCTCCAACAGTAACAGGGCGTAC

Function

symbol description
prpf39 Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39).

NR:

description
PREDICTED: pre-mRNA-processing factor 39 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35877 True 1272 TUCP 0.41 5 46523648 46525996
TU35879 False 825 TUCP 0.52 2 46518871 46521243

Neighbor

gene id symbol gene type direction distance location
LOC103047706 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 4058 46512639 ~ 46514813 (-)
peli2 peli2,LOC103047193,LOC108410474,LOC108258111,LOC100334245,LOC107567396,LOC107574485,LOC106571579 coding downstream 19204 46480645 ~ 46499667 (-)
actr10 actr10,LOC106608088,LOC106571574 coding downstream 102450 46410456 ~ 46416421 (-)
LOC107197829 NA coding downstream 114258 46396499 ~ 46404613 (-)
LOC103044046 NA coding downstream 123804 46387659 ~ 46395067 (-)
LOC103022574 mdga2,LOC108411484,LOC108257548,LOC107704381 coding upstream 119641 46645637 ~ 46936593 (-)
LOC103045279 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding upstream 563553 47089549 ~ 47094904 (-)
LOC103044065 LOC108424424 coding upstream 570100 47096096 ~ 47101631 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding upstream 596172 47122168 ~ 47124470 (-)
LOC103043748 LOC108424468 coding upstream 600481 47126477 ~ 47128782 (-)
G26666 NA non-coding downstream 109807 46395961 ~ 46409064 (-)
G26663 NA non-coding downstream 156953 46361718 ~ 46361918 (-)
G26605 NA non-coding downstream 356772 46076136 ~ 46162099 (-)
G26612 NA non-coding downstream 451683 46066648 ~ 46067188 (-)
G26564 NA non-coding downstream 669279 45847617 ~ 45849592 (-)
LOC111197648 NA non-coding upstream 52291 46578287 ~ 46599431 (-)
G26751 NA non-coding upstream 136123 46662119 ~ 46663963 (-)
G26771 NA non-coding upstream 579319 47105315 ~ 47106324 (-)
G26783 LOC108424466 non-coding upstream 591586 47117582 ~ 47120006 (-)
G26810 NA non-coding upstream 672868 47198864 ~ 47199418 (-)
naa30 naa30,LOC108270341 other downstream 82946 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 226065 46292087 ~ 46292806 (-)
G26588 NA other downstream 583249 45935153 ~ 45935622 (-)
G26388 NA other downstream 1081286 45436109 ~ 45437585 (-)
G26295 atad2b,LOC107697175,LOC107603081 other downstream 1633070 44882778 ~ 44885801 (-)
fkbp3 fkbp3 other upstream 7699 46533695 ~ 46535835 (-)
G26754 NA other upstream 178351 46704347 ~ 46738736 (-)
LOC103039734 LOC108424428 other upstream 1691510 48217506 ~ 48324662 (-)
pln NA other upstream 1752266 48278262 ~ 48288736 (-)
G27145 NA other upstream 2360998 48886994 ~ 48891028 (-)

Expression


Co-expression Network