G26827


Basic Information

Item Value
gene id G26827
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47350628 ~ 47350899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36048
GCAGggtagacgaggaggcggacgcaattgCAAACCAAAACGGGATTTAttcaagaaaacaaatacaaaatacacagggaACTGGGGAAACCgtaaacaggactgaggaaactggggaaaacatacggaccactaacagacgtaaaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagaggAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36048 True 272 lncRNA 0.39 1 47350628 47350899

Neighbor

gene id symbol gene type direction distance location
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding upstream 150420 47139549 ~ 47200208 (+)
LOC103044458 LOC108424466 coding upstream 231614 47115452 ~ 47119014 (+)
prpf39 prpf39 coding upstream 824802 46519113 ~ 46525826 (+)
otx2 LOC108410484 coding upstream 889814 46456013 ~ 46460814 (+)
c3h14orf37 LOC107659812,LOC107574488,LOC107704373,LOC107713862 coding upstream 920579 46420148 ~ 46430049 (+)
man1a1 man1a1,LOC107727625 coding downstream 42348 47393247 ~ 47590416 (+)
LOC103032605 NA coding downstream 567447 47918346 ~ 47926402 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding downstream 589538 47940437 ~ 48196539 (+)
mcm9 mcm9,LOC107549683 coding downstream 850037 48200936 ~ 48219344 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding downstream 881371 48232270 ~ 48311540 (+)
G26770 NA non-coding upstream 244306 47105420 ~ 47106322 (+)
G26766 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 non-coding upstream 255715 47089537 ~ 47094913 (+)
G26762 NA non-coding upstream 337930 47012364 ~ 47012698 (+)
G26725 NA non-coding upstream 580961 46748490 ~ 46769667 (+)
G26717 NA non-coding upstream 687197 46662137 ~ 46663431 (+)
G26857 NA non-coding downstream 316514 47667413 ~ 47670470 (+)
G26860 NA non-coding downstream 321077 47671976 ~ 47672187 (+)
G26861 NA non-coding downstream 328103 47679002 ~ 47681080 (+)
G26862 NA non-coding downstream 330294 47681193 ~ 47681712 (+)
G26864 NA non-coding downstream 331025 47681924 ~ 47682241 (+)
fau fau,LOC108411505,LOC107704371 other upstream 801075 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 3856312 43490323 ~ 43494316 (+)
G25880 NA other upstream 3925722 43424392 ~ 43424906 (+)
G25879 NA other upstream 3928582 43421771 ~ 43422046 (+)
rps29 NA other upstream 3987184 43360469 ~ 43363444 (+)
G26915 NA other downstream 927368 48278267 ~ 48315894 (+)
G26995 NA other downstream 1204898 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 1227904 48578803 ~ 48618075 (+)
G27075 NA other downstream 1390315 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 2096946 49447845 ~ 49448221 (+)

Expression


Co-expression Network