G26857


Basic Information

Item Value
gene id G26857
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 47667413 ~ 47670470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36080
AACAGGAGATGGGTCTCAGATTCAGCTGAGAACTGGGAACACcgtgtcttctctgtatccAGGTGGGGAAATATGTGGAACTGTGCAAGTATAAATGTTTCCAAAGCACTATAAGAGGGATATTTGAGTGTATATGTTCGTTAAAAGGTTTTGCTGTGTAATATGAGCCGCTATGGTCTTGTGTGTTGGTGGACGCTCAGCATCGGGGAGCATTCACTCCCGCGGCCCGCGAGCCGCGCGCCTGGCCGGCGCTCTTGCCTCTgccactagcattagccactgCCCCCGCTAACCGCGCTCCTTACCGGCTCCCCGCTGTTATTCCTCTCGCTCTTTCGGTCGCTAACTTCGCTCTATAACCGTGTTTAAGCCTGTAATTATCTCTCGTGTGTTCGCGCTCTAGTTTTAGCTATTTTCGCTCGGTAATTGTGCCCGTGTGTCGCTGTTTCTCAAAGTAGCTCGGGCTAATTTCGCGCCTTCATTCCTATTGTTTCTCTATACATTTACGCTAGCATTAGCAGTCGCTGTTAGttaatacatgtttattaaaagtcaagtcaattttattctctttttaagagccagtttggccttgttaaagtaaatatagagcCTCTGCCAACCACAATAATGAGTTATTACAGCTAGATAAGCTACAGTTTAAGGTTTCTCTaagtaatcatgtttttatacactttgttcaagttttatactttggtcaattctatacactctatgcagatacaaatattagaaactctgcttaaaatgagatttaaaagcacTAAGATGTAGTTAGTGTGCTCAGTAAAAGTTAAAGGTGTTTTTGGTAATGTAGTGTGTTAATATGAAAGAAGTTTGAGTATTGGTATATGTAtgcatatgtaaatgtattaatatagagtagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36080 True 908 lncRNA 0.41 2 47667413 47670470

Neighbor

gene id symbol gene type direction distance location
man1a1 man1a1,LOC107727625 coding upstream 76997 47393247 ~ 47590416 (+)
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding upstream 467205 47139549 ~ 47200208 (+)
LOC103044458 LOC108424466 coding upstream 548399 47115452 ~ 47119014 (+)
prpf39 prpf39 coding upstream 1141587 46519113 ~ 46525826 (+)
otx2 LOC108410484 coding upstream 1206599 46456013 ~ 46460814 (+)
LOC103032605 NA coding downstream 247876 47918346 ~ 47926402 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding downstream 269967 47940437 ~ 48196539 (+)
mcm9 mcm9,LOC107549683 coding downstream 530466 48200936 ~ 48219344 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding downstream 561800 48232270 ~ 48311540 (+)
amd1 amd1 coding downstream 871065 48541535 ~ 48565601 (+)
G26827 NA non-coding upstream 316514 47350628 ~ 47350899 (+)
G26770 NA non-coding upstream 561091 47105420 ~ 47106322 (+)
G26766 cx43,LOC107675226,LOC107602186,LOC107716890,LOC107598086 non-coding upstream 572500 47089537 ~ 47094913 (+)
G26762 NA non-coding upstream 654715 47012364 ~ 47012698 (+)
G26725 NA non-coding upstream 897746 46748490 ~ 46769667 (+)
G26860 NA non-coding downstream 1506 47671976 ~ 47672187 (+)
G26861 NA non-coding downstream 8532 47679002 ~ 47681080 (+)
G26862 NA non-coding downstream 10723 47681193 ~ 47681712 (+)
G26864 NA non-coding downstream 11454 47681924 ~ 47682241 (+)
G26867 NA non-coding downstream 26872 47697342 ~ 47697580 (+)
fau fau,LOC108411505,LOC107704371 other upstream 1117860 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 4173097 43490323 ~ 43494316 (+)
G25880 NA other upstream 4242507 43424392 ~ 43424906 (+)
G25879 NA other upstream 4245367 43421771 ~ 43422046 (+)
rps29 NA other upstream 4303969 43360469 ~ 43363444 (+)
G26915 NA other downstream 607797 48278267 ~ 48315894 (+)
G26995 NA other downstream 885327 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 908333 48578803 ~ 48618075 (+)
G27075 NA other downstream 1070744 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 1777375 49447845 ~ 49448221 (+)

Expression


Co-expression Network