G26915


Basic Information

Item Value
gene id G26915
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48278267 ~ 48315894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36150
GTAATTCAGTGAAGCTGCTTTATTGTAACAGATGTTGTGTTATTCATCACTCAAACAGAAAGTGTTGTACAGAAACGATCAGTAATAAAGAAAATCAGCAGTTTAGCCTGCTTAACTATAGCATTACATACAGTGTACCACTGCTATATTGTTAAATTACACACATACATCTGTGTACTTATTGGCTGGCTTGAAATCATCACTTTAATAGAAagtgtttaaactgtgcttgtgTCTTCAAAGGTTTTGTGACTGCATGTACACACATTTGTATAGAAGATATGTATATACAAACCAAACAACTATAATAATTGTAGTGAAATAGTTGTGaaggatttaaataaaaaaaaaaacaatgttccatGTGGTTGACGTACTTCCATAGCTTGAGGTGATGTGTATTTGATCAAAAACAGAATCGCCATATTTGGGTCTGGGTCTAATAGTTTCTAATAGATCTCTTTGCAGGCGTACTATGTGCCTATGCTTACTTTGTGGACTCTACCAGTGTAGTATTCAGTGGTTTGTGGAAAGAGGTCACCTACATTTGAAGCCCTAATTCTTTTGCTGGCGCGGGTTGCCTGTATATATTATAGCTTTAATCTGCCCCTGGGGGGGGGGAACAAATAAAATCCTGATTTTAAAGAATTATACTTATCCTGGCTGCTTTATTAGATGTATTAAAGCACACTGCTAATGCAGTGTGGAGGATTATCCACTAGATGGAGCAGGCGGATGCCTGTGAGTTACTCATTTGGGCTCACTTGTAAAGACTTGACCAGAGTCAATGGGCATTTGTGcatattacatttacacttttgtgccATattttttaaa
>TU36151
GTAATTCAGTGAAGCTGCTTTATTGTAACAGATGTTGTGTTATTCATCACTCAAACAGAAAGTGTTGTACAGAAACGATCAGTAATAAAGAAAATCAGCAGTTTAGCCTGCTTAACTATAGCATTACATACAGTGTACCACTGCTATATTGTTAAATTACACACATACATCTGTGTACTTATTGGCTGGCTTGAAATCATCACTTTAATAGAAagtgtttaaactgtgcttgtgTCTTCAAAGGTTTTGTGACTGCATGTACACACATTTGTATAGAAGATATGTATATACAAACCAAACAACTATAATAATTGTAGTGAAATAGTTGTGaaggatttaaataaaaaaaaaaacaatgttccatGTGGTTGACGTACTTCCATAGCTTGAGGTGATGTGTATTTGATCAAAAACAGAATCGCCATATTTGGGTCTGGGTCTAATAGTTTCTAATAGATCTCTTTGCAGGCGTACTATGTGCCTATGCTTACTTTGTGGACTCTACCAGTGTAGTATTCAGTGGTTTGTGGAAAGAGGTCACCTACATTTGAAGCCCTAATTCTTTTGCTGGCGCGGGTTGCCTGTATATATTATAGCTTTAATCTGCCCCTGGGGGGGGGGAACAAATAAAATCCTGATTTTAAAGAATTATACTTATCCTGGCTGCTTTATTAGATGTATTAAAGCACACTGCTAATGCAGTGTGGAGGATTATCCACTAGATGGAGCAGGCGGATGCCTGTGAGTTACTCATTTGGGCTCACTTGTAAAGACTTGACCAGAGTCAATGGGCATTTGTGcatattacatttacacttttgtgccATGTTACAAAATGCATATAaaggtagagaggtagagagagagataaagcaaGGGTCCCCATTGCTCTCTCTATGAGCCTCAGgccattttaatgttttagtaGTGGGTCAGCTGGCCAGGTCACATCATCTTGACCAGaatgagcagcagcagcagcactactaCGATAAGCAGGAAGTTGAGCAGCAGGTTGAGCCCACGGTTGGTGGTTAGATCCATGGTGTGAAAGCAAATCTGTGCTGGAGCTGTCCAATCTGCTGGAGGAGTGCTTGAGCTCGCAGTGAAGCACTGGCTGATCTGGAGGTCACCGGGTCGGGTGGTGGTCAGCGTGCGGGGAAGAGGACCAGGCTACACCATGCTGTCGATCCTTCACATGATGTGGAAAGAGCTAAACACGATTGACAAGGACAAATGAAAGCACATCAttgctgtttttagtaaaaacaGCTTTGTCCACACTTTAAGAAAGGAGTTTATGAATAGGGCTAATTTATAGCAACAATGTATCTGATCTGAGGAGGGCTAGAAGTttataccccaccaattagcactgtaaCAGACTGTATGTTTCCGACATCATGACAGACACTAGCCCCAGGCCGCATTCAGATGTCAGAGCATATTCTGCAAATAATAACTGTGCAACTGTGTCATACCgcacagtgctaattggtggggtgtAAACAGCTTCTAtcacttgttagctacattagcttcacAGACCCAGTCCATTCTGTAAAGAATTGGTTTTGTTTGTTCCATTTCTTACCCTAAAATAGATTAGCTTATTAGCATTGTGTGGGGCAGTTTGATGGTTGTACAGAAAAAAGTTTTACGCAGACATTCAGATCACGTGCTGTTTATTGCAgtcttattatatttattatagcgTGTCACACACTGTGATGGGTCAGGGATGGATAGCCCAGTGCTCAGTGACTTTGAGTCCATTTGCCAGCTGAGGTAGCATGCAGTGAGAGGAGGGGGACGGAGGACAAGAGTGACCAAAGCTTCACAGCTGTTGCCTGCAGTGATGACAGCTTCCTCATCCTCTGCTGCCCAGTCAACATTCTGCCTCTCAATCTACCGCCTGTCTAACACTCATATAgagtttttaaatatgtttgtacATAACTTGAAGAAGATAGAACATTGTTAACGCCAGCCAATAATAAGCTTGAGGAGTTGTTCTGTATTGTTAGACAGTTGCTGTGATATTTGAGATAGGGTAGCTTGGCCCTGTGGGGAAAAATGGTTCCTAGATCTTTGCTAGGCAGtggttaggtggttgctgtgctgCTTTAGATGAGTGCTACTGTGATGCTAGTTTGTTACAGTGTATTTGGTGGTTGATAGGGTGTTGCATTAGAGTTGCTATTGTAATGCTAGTTTGTTACAGTGTATTTGGTGGTTGATAGGGTGTTGCATTAGAGTTGCTATTGTATTCCATATGCTTGCTGGGAAATCACTAGGCAGTTGTAAAGAGGTAACTAGaatttccagGTGGTTGGTGCCTATATTATTGTTACAGGAGTGTTGATGTGCTGCATAATTATATCATTAAATATGTGTGGCTACATAATTAGCTGCATGTACTGTACATTCAGTTTACATTCAGTGTCGATAGGTTCATAACTGCACTTCTGATATCAGTGACAGTAAAACATGACTGAATACACAATGATAACTCATATTCAATTTGTAATGCATGCATCATATAATCCATTGAAATATCAGTTTTCTGCACTTGTTTCATAAAGCAGTGGATGATACATCATTCATAGGAAATCAGAACATGCTTCTGTTTTCAGAGCTGATAACTGTGGCTTCTTAGGGTTAAGGAGTGATGTTACTTTACAGGTGTGTCATGTACAGAGGTGGAGTTTGTGCGATTAGCTCCCATACACTTAAACCCCCCTTTATAAACACTCTTCTGACCCCCACCATGCCCCCCTAATCGACAGAGTCCATGACCCTCGTCCTCCTCCAGCTCACATCAACAAGACGATGATGTAGATGAGCAGCAGGCAGATGAGGATGAGGCAGAAGTTGATGAAGAGCTCCTGCATGTTCTGCTTGGCCTGCTGGGGCACCTCCATGGTGGACGCCCTCCGGATGGCCGCGCGCGTGATGTGCTGCACCTTCTCCATAGCGGAGGACAGAGAACAGCGCAGCAGCGCACACCAGTGGCCACAGAGGTGTAATACAACAGAGGccgagacagacaaagagatagagagagagatggaaagagaggtGTGGAGGAGAGGGCAGCGTCTCAGAAAGGAGTGTGGTGGGATGCAGGGAGTGGATGGAGGATGCAGTGGAGGTGCTTGTGGTTGTCGTTGTGACAGAGGTGGTCCAGGGGCCGGtagactccaca
>TU36153
GTTGCTAGTGTAtacccaggtggttgctgtgctgCTTTAGTGCTACAGTGATGCTAGGTTGTTAAAGTGTTGCATTGTTATGGGTTGCGAGGTAAGTGGTAGAGTATTACTAGATGGTTGATGTGGTATTCTTAATGATTTTTGTTGTGTATTTGGagggttgctatagtgttgctagagTGTTTTTAGACAACTGTAAGATGGCAGCTTGGATATATTAGCATTTAGGGTTGTCGCTGTTGATTGGCTGCTATGCTATTTTTGATTTTCGAGGTGGTTGCTAGTATAtacccaggtggttgctgtgctgCTTTAGATGAGTGCTACTGTGATGCTAGTTTGTTACAGTGTATTTGGTGGTTGATAGGGTGTTGCATTAGAGTTGCTATTGTATTCCATATGCTTGCTGGGAAATCACTAGGCAGTTGTAAAGAGGTAACTAGAATTTCCAGGTGGTTGGTGCCTATATTATTGTTACAGGAGTGTTGATGTGCTGCATAATTATATCATTAAATATGTGTGGCTACATAATTAGCTGCATGTACTGTACATTCAGTTTACATTCAGTGTCGATAGGTTCATAACTGCACTTCTGATATCAGTGACAGTAAAACATGACTGAATACACAATGATAACTCATATTCAATTTGTAATGCATGTATCATATAATCCATTGAAATATCAGTTTTCTGCACTTGTTTCATAAAGCAGTGGATGATACATCATTCATAGGAAATCAGAACATGCTTCTGTTTTCAGAGCTGATAACTGTGGCTTCTTAGGGTTAAGGAGTGATGTTACTTTACAGGTGTGTCATGTACAGAGGTGGAGTTTGTGCGATTAGCTCCCATACACTTAAACCCCCCTTTATAAACACTCTTCTGACCCCCACCATGCCCCCCTAATCGACAGAGTCCATGACCCTCGTCCTCCTCCAGCTCACATCAACAAGACGATGATGTAGATGAGCAGCAGGCAGATGAGGATGAGGCAGAAGTTGATGAAGAGCTCCTGCATGTTCTGCTTGGCCTGCTGGGGCACCTCCATGGTGGACGCCCTCCGGATGGCCGCGCGCGTGATGTGCTGCACCTTCTCCATAGCGGAGGACAGAGAACAGCGCAGCAGCGCACACCAGTGGCCACAGAGGTGTAATACAACAGAGGccgagacagacaaagagatagagagagagatggaaagagaggtGTGGAGGAGAGGGCAGCGTCTCAGAAAGGAGTGTGGTGGGATGCAGGGAGTGGATGGAGGATGCAGTGGAGGTGCTTGTGGTTGTCGTTGTGACAGAGGTGGTCCAGGGGCCGGtagactccaca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0032501 multicellular organismal process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU36150 False 837 lncRNA 0.37 2 48278267 48315894
TU36151 True 3208 TUCP 0.43 4 48278267 48282874
TU36153 False 1332 TUCP 0.45 2 48280765 48282874

Neighbor

gene id symbol gene type direction distance location
mcm9 mcm9,LOC107549683 coding upstream 58923 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 81728 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 351865 47918346 ~ 47926402 (+)
man1a1 man1a1,LOC107727625 coding upstream 687851 47393247 ~ 47590416 (+)
tbc1d32 tbc1d32,LOC107602184,LOC107675228,LOC107727650 coding upstream 1078059 47139549 ~ 47200208 (+)
amd1 amd1 coding downstream 225641 48541535 ~ 48565601 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding downstream 304836 48620730 ~ 48621912 (+)
LOC103035465 NA coding downstream 333794 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 356193 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 374230 48690124 ~ 48694492 (+)
G26910 NA non-coding upstream 65285 48212137 ~ 48212982 (+)
G26890 NA non-coding upstream 346316 47908691 ~ 47931951 (+)
G26872 NA non-coding upstream 525401 47752634 ~ 47752866 (+)
G26867 NA non-coding upstream 580687 47697342 ~ 47697580 (+)
G26864 NA non-coding upstream 596026 47681924 ~ 47682241 (+)
G26982 NA non-coding downstream 102938 48418832 ~ 48450456 (+)
G26993 NA non-coding downstream 236339 48552233 ~ 48552667 (+)
G26994 NA non-coding downstream 236955 48552849 ~ 48553157 (+)
G26996 NA non-coding downstream 246710 48562604 ~ 48567294 (+)
G27008 NA non-coding downstream 318550 48634444 ~ 48634842 (+)
fau fau,LOC108411505,LOC107704371 other upstream 1728714 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 4783951 43490323 ~ 43494316 (+)
G25880 NA other upstream 4853361 43424392 ~ 43424906 (+)
G25879 NA other upstream 4856221 43421771 ~ 43422046 (+)
rps29 NA other upstream 4914823 43360469 ~ 43363444 (+)
G26995 NA other downstream 239903 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 262909 48578803 ~ 48618075 (+)
G27075 NA other downstream 425320 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 1131951 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 2023670 50339564 ~ 50408570 (+)

Expression


Co-expression Network