G26944


Basic Information

Item Value
gene id G26944
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48212095 ~ 48215258 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36184
caacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaatcacctagcaaccacctagaaacaccatagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccactagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36186
agcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagaaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagaaacaccatagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36189
caacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaatcacctagcaaccacctagaaacaccatagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36190
agcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagaaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36192
tagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccactagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36193
tagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36196
agcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagaaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36197
tagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccgcctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacacctagcaaccacctagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc
>TU36199
caacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaactgcttaggagtgacctaccaaccacttagcaacaccatagcaaccaccctggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaaccacctagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaaccttagcaaccacctagcaacacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36184 False 648 lncRNA 0.52 2 48212095 48212979
TU36186 True 966 lncRNA 0.34 4 48212095 48215258
TU36189 False 486 lncRNA 0.51 2 48212095 48212979
TU36190 False 737 lncRNA 0.52 4 48212095 48215258
TU36192 False 520 lncRNA 0.53 3 48212095 48213817
TU36193 False 326 lncRNA 0.52 2 48212095 48213817
TU36196 False 672 lncRNA 0.51 4 48212095 48215258
TU36197 False 738 lncRNA 0.52 2 48212095 48213817
TU36199 False 377 lncRNA 0.53 3 48212095 48212979

Neighbor

gene id symbol gene type direction distance location
hsdl1 NA coding downstream 1072777 47134735 ~ 47139318 (-)
LOC103033231 LOC103033231,LOC108424426,LOC108257936 coding downstream 1077794 47129070 ~ 47134301 (-)
LOC103043748 LOC108424468 coding downstream 1083313 47126477 ~ 47128782 (-)
LOC103044766 LOC103044766,LOC108424467,LOC108257939 coding downstream 1087625 47122168 ~ 47124470 (-)
LOC103044065 LOC108424424 coding downstream 1110464 47096096 ~ 47101631 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding upstream 110627 48325885 ~ 48446366 (-)
cdk19 cdk19 coding upstream 230119 48445377 ~ 48539382 (-)
ppil4 ppil4 coding upstream 347246 48562504 ~ 48576593 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding upstream 507742 48723000 ~ 48735370 (-)
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding upstream 531642 48746900 ~ 48851645 (-)
G26888 NA non-coding downstream 322749 47887751 ~ 47889346 (-)
G26868 NA non-coding downstream 514515 47697381 ~ 47697580 (-)
G26863 NA non-coding downstream 530334 47681169 ~ 47681761 (-)
G26859 NA non-coding downstream 541633 47667957 ~ 47670462 (-)
G26847 NA non-coding downstream 615624 47586130 ~ 47596471 (-)
G26953 NA non-coding upstream 44124 48259382 ~ 48259692 (-)
LOC111188411 NA non-coding upstream 177863 48393121 ~ 48394416 (-)
LOC111188398 herc2 non-coding upstream 220518 48435776 ~ 48438690 (-)
G27029 NA non-coding upstream 336978 48552236 ~ 48552562 (-)
G27030 NA non-coding upstream 337574 48552832 ~ 48553160 (-)
G26754 NA other downstream 1473359 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 1676260 46533695 ~ 46535835 (-)
G26695 prpf39,LOC107729032 other downstream 1686099 46518871 ~ 46525996 (-)
naa30 naa30,LOC108270341 other downstream 1776170 46427417 ~ 46435925 (-)
G26636 LOC108411685,LOC108258103,LOC101066055,LOC105902101 other downstream 1919289 46292087 ~ 46292806 (-)
LOC103039734 LOC108424428 other upstream 2248 48217506 ~ 48324662 (-)
pln NA other upstream 63004 48278262 ~ 48288736 (-)
G27145 NA other upstream 671736 48886994 ~ 48891028 (-)
G27258 NA other upstream 1423501 49638759 ~ 49639444 (-)
G27400 NA other upstream 2266631 50481889 ~ 50531639 (-)

Expression


Co-expression Network