G26982


Basic Information

Item Value
gene id G26982
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48418832 ~ 48450456 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36251
ggagcaccatcattcagAagacacagttccactgctccacagctttaTACTCCTCTAGCCCATGCCATTAGGGTTTTCTGTTCGCAACACTTCTCTACAAGGACTAGAcaagatgtgtgtgtgcattgccACATTTGTGTCAGCATTAAGTGCAATTTAAAGAAGCTGTATGCATTCATTATAAGaattgtccacaaacatttggacatatagtgtactTCTCTTAATTACCACTAGATGTCAACACAGTGCAGTTTCAGATTTAGGCCTTTTTAAAGGCAAGACTTAACAGAAACCTGGATAACTTAAGCCCTGGATAACTTCAGGATCAACTGGGTGTATTTAGCTGTCCTGTAATCAGACAGATTGTTAATGTGGCCCAAATTAAAGGATTggttatcaatttttttttttcaaatttcctCTTCCCCTCAACATCAAATCTGTTGTTCTGCCCTATGATTAATGAATCTGTTTAAAACAAGATTTGGCTACGAGGAACACATAAGCCTGGAACCAATGGCATCTTAGCTCCCCTGCCCCAACAAGACCACCGGGTGAGTCCATTCAGCCCCCTCGTTTGATTCAGTGCTTGAGAAACTCTGCTATTAACGCGAGTCTGCACGCTAAGACCgttagaaaaaaactgaaaaagaaagaaagaaacaaacaaacaaacaaatatgttCTTCAAaagcaacaacaataaaaaacacaacattgtAAAAcccaaaatttaaaaatatcaaaaggACTAAAGAGGTAACAGTCACTGGAGCAGTTTACCTGCTAGCTGCCCCAGacaaggtaacacacacacacacacacacacattcacactcacaaacacacacatagtctctcacacacatactcacacacaggATGGACACTCTTAATGTCGCAACCAAAAAGCTCCATGTTCCTCTTCGGCAAACAATAAAAtgctttgtttctctttctttttttttgtcttttccttTTGCTTAATTTTTCTGACAAACGTTGATATTTGCTGTTCGTCGCTGTTGATGAAATGGACGTCCAccacggaccaaagagtctgaaTCATAAAAGTAAAGGGTTTCCTCTGCAGTTCCCCCATCTGAGAATTCAATATTTACAAAAGGGTGGGGGGCGGAGAAAAGGTGGAAATGGTCAAAGCCTCTGTGAGTCCGCAGTTTCTGTCTGTAGTTGAAAATATGTAAAGGCGCTCTGCACATGCTCGAATAGTTGCGTCCTGCTCTGGTTTAGAGTCCGGCCGGCGGGCATTACGCTCCGTAAGTGCTTGTTGTCCTTCTCATTAATGTGCATGTAGGAGCAGTGTGCTGTCAGACATGCACAGGTTTACCTCCAgtctgacagagagagagagagagagagagagagaggagagagagagagggagagaagagagagagaaggagaaaaagaataagagaaaaaagacagatagagagcagaagagagatagagggagataGATATACCGCCTGTCAAAAGTTCATGGaaacttctttctttctcttgaaatgatcctgtttttttgttaaaaagttCAATTTGCATAATCACATTAATGATTTTGGTATTTGGTAAtactttgtattttgtatttagcaAAATCCTTTAAATTATTACTTAAACCTTAAACATGGATTAAAAAGAGCACCAAACACTcttaaaatcaaataataattttatacaaCTGAATGGTTTAAATGCGAATTCTATTGAGGTGTCAACTTTACATGAATGTAAACAAAGTCATTCTGAGTGGTTTGGTGAGAACAGTGGCATTTAAGTGAAACTTACAGAGCCAGAGCTGTTCACAGTGGTTGTAactgtaaaaggaagcagactTTAGAAATGTACACTAATCGAAagctattaaatattaaatacagtggCTTCAATTAATGTCTGATGCCTAATGTCTGAGACACTGTTTTACATGAGATTTGACAGAGGGATTTGgaataaaatctattttaaaaaagcaatgcAAATGGCTACATGCAGGGCACAGTAggaatatacatatatgtactgTACAAAGCCTTTTAATACACATGCAAGTAAACTAGCCAATTAGGATAGCAAATAAATTAGCTTTATATGTAATGCATTCATATTGACTTTGGAtctttttacttctactgtACAGAAATCTGAGACTGCATCACCCTGTTTACACTTGGTCAGGTCATGTAATTAATATCTGGTTtgtattttaacagtattttattagattttatccACATGTATTTACACTCGGTAgaatctgtatctgttttaaatgcttcTTGGGTATCTTCGCACTTGCAAACAGGTTTAAACAGGTTCTCAGTTTCTCGAAAATGGACATACCAGTTTTACACCAAACCTCACTGAAATTGACTCAGAATTCCTGTGTCTGATAACTGCTGACTTCTTGACAACAGGATAAAATATTGGCACTAACTTCAACTTTAAAGTGccaaaaaaatattctatttaATGACACTTCACTGCACAAGATATAGCTAGGTGCCCCTGAACGTTTGACAGACAGCTTAGacggacagaaagacagacaaaagaaaagaaaagggtgGCTATTTGGTTCCTTTGTGTTAATATTAGCCTCCATATTGCAGGTGTGTGGCTGGTCGATGCAGGATCAGAGCTGCCACAGGCAGGCCACTTCCACACCATCTCTGAGGGTCATGAGGGGCCGGTTCTGTTTAGATGCTGAGCTTCCTGATGACCGGCACTGTATGGACACTGCAGGTTGTCATGGCAGGACCACGGGTCAGGCTGGTGTTGGTTCTGATCAGAGAGAGGGTTTTAGTCCTCCTGTCGCTGGATCTCAGAGGGATCTCTGGATACACCATAGAGTTGTGGAGGGTGCTGGTCTCAGTGCTACCAGTAGACTTCAGTTATGGATgttatgttaatgttatggaTCAGCTTGTGTGTAGAAGCTCTACTGAAGCAGTGCTCAAGTATTGTCTGTAAGGGTCTCTACATGTTTTCCAACACAGTCCCATAATCTCACAGTGAGGTTTAAATCCATTGCCATATGTTGTCATGATTTCAACTGACTTTCTACTCTATGACGTCTGCACATCTGTGCAAATTCTATGTGACTGACTGTGTATTTGCTCCAACATCACTTGAGCTGTGTCCAAAACCGATACTATTCACTATGTAGTGCACTACTTTAGGGTTCAGACATTTTGCAGTGGTGTCCAAAAATGTAGTGCGGAGTTTTCAGTGCATTGTAACATATATACCACAAATCAATGTAATATTAGCTACCCATAATCCACTGGGTTGTTTGGTCTGAAGATTTGAGCACAGCTTCTCTGAGAAAGACTAATGTTCAGACTAATGTCATTGCACAACAATGAGGTTTCAGAAATTGTTTAGTACAGTCGAATTAGGTTCCACATAATAGTGCTCTATATAGATGtgatctagattttttttttaaatagtgaatAGTGCACAGTTTGGACGACACAGATCTGATTTCATAAACAGGGCAACTAACTAGTgaaattctaaatatttaaaaatattttgttggaaTAAATAGCTGCAAACTATTATAGTTGAATCACTAGAGAAGGATTCGTTTTAGTGCCTTTGGACTAGTGCAACAGTTCTCTTATAAACTTATAAAAAGATGTTTGATGTTTGGACAGAAACAACTATCAGCTTGAATTAAGGTAAATTAACCCTCATTCTGCGATTACATATTAATTACAAATCACAGATTGAGATTTTGCGATTTTCTATGAAGGAGAAGCAGCAGTGGCAACATCAATGTACCATAGTGGTCAGCAGAACTTTCAGTTAAAAGATAATTTCTCATTACAGTGAAATTAGCTAGatacttttttgtttgtggTCACAGATGCTAAACATGTATACGCTGGTAAACACAgataaatacttacatttttaaacattaaaagtgCTTCAGATGGGATAGACCTTCATTTGATACAGAGGTTCTTCACACACTTAGTGCATCAATAGAACCAAAAGtagttcttctatggcattgcTTAAAGGACAGGTAATCCTGTTAATTTACAGCAAAAGACAACACTTGAAAGTTGCACTTATTGCTTTCTAGGAAAAACAGATCAATGTTCTGACCATGGCAACAGTTATATGGTTGCATGTAACTGTCTGTTAGCCATGCACCACTGTGATGcatggaatgttttttttttgttgtagacCTAGAAAATTATTTTTGAAGTAAAAATGATATGTAAATACTATAAACATAATTACATCATTTCACTCTTTTGCATAATTATTTAGTACATACCtagtaataaagtatatttacaaGCTGTATTGAGATTCAAATGCCAAAAACACCAGAAAACCACATTTGTGTTCTAATTGTGTAAAACCACTGCCCTGCTACTAATTGGTCAGATCTTTGCAGACTTCATCGTGTGTTGGAGCAAGTAAAAACAGAAGTGAACTGAACAGTCAATCGAGAGCACTGCTTCAGTAGATTCTAAAGTCAAATGTGGGGGGTGGAGCTTATGGGTGGGCGGAGTTTATGACGGCAGAAGCAGTAGGCCCAGATATCACATCTTGCAGCTGTGATACAGGACTGTGAGGGCAGTGCAGGAGGCTACTGCTAATGCTGTAATGCTGTCAGGACatagtatacagtaccagtcaaaagcctGGACACATCTATTTAGTGTAATTAGAGTATTTGTTTTTAaggcttcttctttttctatatcttcttcttattattgtcattattattattactgtttaaatGCCAAAACAATACATCTACATCTGGGAGTCCTCCACAACATGATACTGTCAGTTCTGGGGGGATTGAAGGCCAACATTGACTCccagtgaattatgggaagcCAACAAACGGTTGCCATTACTGTACAGCTTAATATCCAGAGAATGGTGCTTTTATACATGAGCAAACAGATACCCGCACTGGCTAGCATCATGCTAACTAATCGggttaaactaaactaaagggGCAATCCTCTCCACCCAAATAGAGCCAGGAGCTAATGGTGCTCTTTGGGACTCCTCAAACTAGACTCAAACTAGAATCTCCTGATGGTGGACCATCACTTAGACAGTTGCACCACCTGGAATTCCTCAAGagtttttgactggtactgtaaatccTGCGATGACAACTTAAggctgaaaaattaaataagaaatagaGGGCAGATGGATCACAGAAGTGCAGGAAGAATGGCAGCAAGACCTGTGTACATGTGCTTGTGGGTTTGTAAGTGTATTTctctgtgtatgtatgtgcgtgtttgtgtgtgtgtttgtgtgcatgcagGAGTGTGTCTCAGTAGCGGTGAGACTGATGAGAGTACTGTGAGCTTTGCTGAGATGAAGACGAATATCCCATAGTGCTCTGTGACTGGGTGGAGCCCTGGACGTTGCTTTGGTAACCAAGGCGCGAACCGGAGTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36251 True 5494 lncRNA 0.31 2 48418832 48450456

Neighbor

gene id symbol gene type direction distance location
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 107292 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 199488 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 222293 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 492430 47918346 ~ 47926402 (+)
man1a1 man1a1,LOC107727625 coding upstream 828416 47393247 ~ 47590416 (+)
amd1 amd1 coding downstream 91079 48541535 ~ 48565601 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding downstream 170274 48620730 ~ 48621912 (+)
LOC103035465 NA coding downstream 199232 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 221631 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 239668 48690124 ~ 48694492 (+)
G26910 NA non-coding upstream 205850 48212137 ~ 48212982 (+)
G26890 NA non-coding upstream 486881 47908691 ~ 47931951 (+)
G26872 NA non-coding upstream 665966 47752634 ~ 47752866 (+)
G26867 NA non-coding upstream 721252 47697342 ~ 47697580 (+)
G26864 NA non-coding upstream 736591 47681924 ~ 47682241 (+)
G26993 NA non-coding downstream 101777 48552233 ~ 48552667 (+)
G26994 NA non-coding downstream 102393 48552849 ~ 48553157 (+)
G26996 NA non-coding downstream 112148 48562604 ~ 48567294 (+)
G27008 NA non-coding downstream 183988 48634444 ~ 48634842 (+)
LOC111188407 NA non-coding downstream 214199 48664655 ~ 48668564 (+)
G26915 NA other upstream 102938 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 1869279 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 4924516 43490323 ~ 43494316 (+)
G25880 NA other upstream 4993926 43424392 ~ 43424906 (+)
G25879 NA other upstream 4996786 43421771 ~ 43422046 (+)
G26995 NA other downstream 105341 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 128347 48578803 ~ 48618075 (+)
G27075 NA other downstream 290758 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 997389 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1889108 50339564 ~ 50408570 (+)

Expression


Co-expression Network