G26993


Basic Information

Item Value
gene id G26993
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48552233 ~ 48552667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36262
cactagtgctggacgatatggcaaaaaattatatcacgatatattccttaatttcggtcgatacgatataatttcgatatcgatataaactatataaaactatataaaatactttgaaggcctcagaaaaactgctaagaatccctgcaatggaaatctgtacactactgtctgaaatcttaaattgaagtctttaaagcctcctctcacaaaaaactgtataatactttataaataaaaaattatcagaataaatcaatgctcacttttatttgcatgtagcaaaataaaaacatgacatccctgtcaaacataaacctataacctatatgcatattaccaatataaataactttacattacaacagaggcagagcttcttattcttttgtaaacatatttaacagatcaaaacaaaagtgcttcaaccagaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36262 True 435 lncRNA 0.29 1 48552233 48552667

Neighbor

gene id symbol gene type direction distance location
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 240693 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 332889 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 355694 47940437 ~ 48196539 (+)
LOC103032605 NA coding upstream 625831 47918346 ~ 47926402 (+)
man1a1 man1a1,LOC107727625 coding upstream 961817 47393247 ~ 47590416 (+)
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding downstream 68063 48620730 ~ 48621912 (+)
LOC103035465 NA coding downstream 97021 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 119420 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 137457 48690124 ~ 48694492 (+)
LOC103042815 NA coding downstream 146946 48699613 ~ 48707949 (+)
G26982 NA non-coding upstream 101777 48418832 ~ 48450456 (+)
G26910 NA non-coding upstream 339251 48212137 ~ 48212982 (+)
G26890 NA non-coding upstream 620282 47908691 ~ 47931951 (+)
G26872 NA non-coding upstream 799367 47752634 ~ 47752866 (+)
G26867 NA non-coding upstream 854653 47697342 ~ 47697580 (+)
G26994 NA non-coding downstream 182 48552849 ~ 48553157 (+)
G26996 NA non-coding downstream 9937 48562604 ~ 48567294 (+)
G27008 NA non-coding downstream 81777 48634444 ~ 48634842 (+)
LOC111188407 NA non-coding downstream 111988 48664655 ~ 48668564 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 170664 48723331 ~ 48735530 (+)
G26915 NA other upstream 236339 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2002680 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5057917 43490323 ~ 43494316 (+)
G25880 NA other upstream 5127327 43424392 ~ 43424906 (+)
G25879 NA other upstream 5130187 43421771 ~ 43422046 (+)
G26995 NA other downstream 3130 48555797 ~ 48641905 (+)
LOC103035773 NA other downstream 26136 48578803 ~ 48618075 (+)
G27075 NA other downstream 188547 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 895178 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1786897 50339564 ~ 50408570 (+)

Expression


Co-expression Network