G59096


Basic Information

Item Value
gene id G59096
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12249307 ~ 12263165 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU67284
TTATCTGGATCTGCTCCACTAGCATGGCCAACAAATACTCCATCCCCGGCATTCAGGTCCATATCATCTGGGGACCGCTCAAAATTGATGACCTGAGGATCTGAGTCACAGTTGAAGTAGAGGGAAACCTGCTCATTCAAAACACTGATGGAAAACCGGGTCCAGGTCATGGTCATCGAGGGCACGACGAATCTGGCCGCCTCATATGAACTCTGCGAGTCAGGCTCGGTGTAGTAGAAGATAATATGCTGCTTGCCGTTTTCCACTGCCGACAGCTTCACACCAACATACATGATGTTATGGGTTGGGTCAGTGATGGAGAATAAGACGCCAGGCTTGGTGGACGTGGGTTTTATGTTGAAAATGAGGGAGAAATCACGGTAGAAAGGGCTGGGCAGGTGGGCCGCAGCTGACTGTCCAACATTGGCTTTTGGGCTAAACATATAGCTGGGGCTGTTGTCATGTTCAAAGATTTTGGTGACGCCATCAGGTGGAGGATCGCCAATTAACTGCAACAGCGACACTCCACTTTCTTCTGCTGTTCTGGGCGGCTCTGTCCTCGGTCGTGATGTGGGCCTTAGGGTAGACAGGTAGGCCGGTGTCTGCGTGCCCTTTGCATTTGAGTCATCAGACCAGAACCAGCCATGTGTGTGGCATATCCTCAAGCACACCACAATAAAGAGGCACAGCCAAAACCTGAGCTCAGACATCACGTTCACTTCCAGTCATTCAGCAATTCAAGCAGGATCCTGACATGCCCTCAACAGTAATCCACACCACACACACAGAGACTCGTCCCTGGCTCACCGTAAAGTCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU67284 True 819 lncRNA 0.51 2 12249307 12263165

Neighbor

gene id symbol gene type direction distance location
CI01000009_12176488_12184112 OBSL1 coding downstream 63647 12176154 ~ 12185660 (-)
CI01000009_12167744_12175422 NA coding downstream 73885 12167744 ~ 12175422 (-)
CI01000009_12152712_12167719 OBSL1B coding downstream 81588 12152465 ~ 12167719 (-)
CI01000009_12007202_12021667 MFSD6 coding downstream 227270 12006768 ~ 12022037 (-)
CI01000009_11947288_11963040 NAB1, NAB1B coding downstream 286267 11946457 ~ 11963040 (-)
CI01000009_12304891_12322499 NA coding upstream 41524 12304689 ~ 12322924 (-)
CI01000009_12486758_12498650 CALCRLA, CALCRL coding upstream 222461 12485626 ~ 12498650 (-)
CI01000009_12531562_12540003 NA coding upstream 267960 12531125 ~ 12540373 (-)
CI01000009_12643324_12643737 NA coding upstream 380096 12643261 ~ 12643988 (-)
CI01000009_12659018_12693857 COL5A2 coding upstream 395198 12658363 ~ 12694684 (-)
G59099 NA non-coding downstream 6969 12201926 ~ 12242338 (-)
G59094 NA non-coding downstream 48915 12200030 ~ 12200392 (-)
G59090 NA non-coding downstream 51867 12197149 ~ 12197440 (-)
G59088 NA non-coding downstream 60448 12188542 ~ 12188859 (-)
G59035 NA non-coding downstream 100767 12142828 ~ 12148540 (-)
G59100 NA non-coding upstream 13195 12276360 ~ 12277913 (-)
G59151 NA non-coding upstream 102821 12365986 ~ 12369074 (-)
G59184 NA non-coding upstream 110710 12373875 ~ 12374203 (-)
G59185 NA non-coding upstream 111161 12374326 ~ 12374805 (-)
G59186 NA non-coding upstream 111701 12374866 ~ 12375298 (-)
CI01000009_08858198_08860555 NA other downstream 3388744 8856310 ~ 8860563 (-)
G55814 NA other downstream 3821295 8425821 ~ 8428012 (-)
G53515 NA other downstream 6744059 5502395 ~ 5505248 (-)
G52828 NA other downstream 8017838 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 8987350 3261038 ~ 3262843 (-)
G59097 NA other upstream 25052 12288217 ~ 12289518 (-)
CI01000009_13975122_13976026 NA other upstream 1712223 13975099 ~ 13978614 (-)
G59490 NA other upstream 1770399 14033564 ~ 14037873 (-)
G59811 NA other upstream 2599232 14862397 ~ 14887464 (-)
G59941 NA other upstream 2868939 15132104 ~ 15132503 (-)

Expression


Co-expression Network