G27008


Basic Information

Item Value
gene id G27008
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 48634444 ~ 48634842 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36304
tgggcgccgagtggtccagcggtctaaagcgctgccactatgagcgggaggtcgcaggttcgaaccccgctcatgcagctttgccatcaagctgccggcatcagagggagcaaaattggccctgctccctcttggtgggtagatggcgctctctccccacatcactcctatggtgatgtctgcagcagctcgaaaagaagcggtggctggcttcacatgtatcggaggaagcatgtgttaatcttcaccctcctggtgtgttggggcatcaatagtgatagggggagtcctaatcagtgggttgggtaattggccgtgtaaattggggagaaaatgggaaaaattagaaataaaattataaaaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36304 True 368 lncRNA 0.52 2 48634444 48634842

Neighbor

gene id symbol gene type direction distance location
LOC111194359 LOC108441310,LOC108412179,LOC108441308 coding upstream 12532 48620730 ~ 48621912 (+)
amd1 amd1 coding upstream 68843 48541535 ~ 48565601 (+)
cep85l cep85l,LOC107727619,LOC107603087,LOC107678822 coding upstream 322904 48232270 ~ 48311540 (+)
mcm9 mcm9,LOC107549683 coding upstream 415100 48200936 ~ 48219344 (+)
fam184a fam184a,LOC107678849,LOC107697135,LOC106607780 coding upstream 437905 47940437 ~ 48196539 (+)
LOC103035465 NA coding downstream 14846 48649688 ~ 48654677 (+)
LOC103035149 NA coding downstream 37245 48672087 ~ 48679878 (+)
LOC103034613 NA coding downstream 55282 48690124 ~ 48694492 (+)
LOC103042815 NA coding downstream 64771 48699613 ~ 48707949 (+)
ginm1 ginm1 coding downstream 76731 48711573 ~ 48722910 (+)
G26996 NA non-coding upstream 67150 48562604 ~ 48567294 (+)
G26994 NA non-coding upstream 81287 48552849 ~ 48553157 (+)
G26993 NA non-coding upstream 81777 48552233 ~ 48552667 (+)
G26982 NA non-coding upstream 183988 48418832 ~ 48450456 (+)
G26910 NA non-coding upstream 421462 48212137 ~ 48212982 (+)
LOC111188407 NA non-coding downstream 29813 48664655 ~ 48668564 (+)
G27072 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 non-coding downstream 88489 48723331 ~ 48735530 (+)
G27099 NA non-coding downstream 130647 48765489 ~ 48765945 (+)
G27130 NA non-coding downstream 219670 48854512 ~ 48874216 (+)
G27150 NA non-coding downstream 269814 48904656 ~ 48906548 (+)
LOC103035773 NA other upstream 16369 48578803 ~ 48618075 (+)
G26915 NA other upstream 318550 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2084891 46528368 ~ 46549553 (+)
LOC103033920 LOC108416105 other upstream 5140128 43490323 ~ 43494316 (+)
G25880 NA other upstream 5209538 43424392 ~ 43424906 (+)
G27075 NA other downstream 106372 48741214 ~ 48742439 (+)
G27238 LOC107747660 other downstream 813003 49447845 ~ 49448221 (+)
moxd1 moxd1,LOC107737327 other downstream 1704722 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 2110041 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 2135021 50769863 ~ 50772162 (+)

Expression


Co-expression Network