G59095


Basic Information

Item Value
gene id G59095
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12254288 ~ 12291965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU67281
TGGGTGAAAACTTTTTTTATGAATTTAAAATCTAAAATACATACTTGTGAGAGGAAAAAAAATTACCTTTATTTTTTTAGTAATCAGTCAGTGAACAGTAAACACATTCATGATATGAAATGGCTTGTGATTGATATCTAATGTTAATATTGTGCATGAACAGACAACATAGTTTAAGATATGTGTTGACAGGTCAGGTTTTAAGGAAACAGATTTTAATACACAAGAAGTGGTGCCAAAATTATTGTGGCAAACGAAAACAAAATCATTTATTCAGTGCCTCTGAGACATGGTACAGCACATACTGGTTAAAAAAAAAAAAAAAGACTAGAAGCCCACAGGGTTGTACTGAACACATCAGTAGCACTATAGTGGATTAGGTGTCTGAAATTCCATATGGATAGAAGATAAAGTGTCTTCATAAAACACATCTGTCTCTCTTAAACAACACTGTCAGCAGCTGTTTCATAAGTGAAAAGCACCGAATGCAACCAAAGCTTCTGATATGTCCAAAGAATTATGGGACATGTAACCACTATTTTTGAGTAAAATAATTTTTTTACATCAATATTTGTTACAAAAATCTTGCAGCTTCTCTTTACTTAATCGTCCGCTTTGCTTTATCAAAACTTCTGGAATCAACCAGAAGAGTAAATCAAGCAATGACACTAAGAAGAACGTCCATATGAAATTTCACATTAATAGAAAAAACACACAGTGATCCCATAGATGCAACAGGAGTATTTAAAATAATTTTGTTTTGTACAAAAACTCTTCCGAGGGACAAATTGAATTATTCAAGCCTGCTGGAGCTTTTTTGAGAGAGCGATCATTTTTAGCTACAATTAACTATTTCAGTCTTGCACTTTTATCTGTGGAAGTATGTAAAAAAAAAAAAAAAAAAAAAACAAAAAGTTTTATGACACAAAACTGTAAAATGTAATGTAAAACTTACAGTATCAAACTATTGTTTTGGCCACCAAAGTTGTACTTGCCTCAATAAAATGTGACCGCTTTGTGCCCCTAAACTCTCAAAATAATTCAAAGAGACTTTCTTCCGCTGTGCCCCTTCAGAATGACTTGGATGTGCTCCTAAAACATGATGTCCACTCAAAGTTGTCAATATAACAAGCTGTCTAAAAGATAAAGTCTTTTTTAGACACTCTTTTAAGATAAAGGCATTTGGCCTGAGCAAACACAGCTTACAGTGCACTAAAAATATTGTAAATGAACAGCACTGGAAACTCAAGCAAGAGTCTCAACTGCCGAATAACGTTTTTTTTTTTTTATCTCAGAAGCTATTCATCATGACTCTATTTGCTTATTGTGTATTTATATATGTTCATTTGCTTCACATGACAGTTTATTCTATAACCGTGTTTCTAGATGTTTATCACAAAACCACACAAATACCAACTGTATGCTCTCAGGATTTACTTGGCAGATGATTTCAATCATAAATCCAGCCTGAACATATGGACTAGCAATTCTGTGTTAAGTCACTCCTGCCAAAAATGTAACCTGAAAGCTGCATTTACTGCATCTCAGC
>TU67280
TGGGTGAAAACTTTTTTTATGAATTTAAAATCTAAAATACATACTTGTGAGAGGAAAAAAAATTACCTTTATTTTTTTAGTAATCAGTCAGTGAACAGTAAACACATTCATGATATGAAATGGCTTGTGATTGATATCTAATGTTAATATTGTGCATGAACAGACAACATAGTTTAAGATATGTGTTGACAGGTCAGGTTTTAAGGAAACAGATTTTAATACACAAGAAGTGGTGCCAAAATTATTGTGGCAAACGAAAACAAAATCATTTATTCAGTGCCTCTGAGACATGGTACAGCACATACTGGTTAAAAAAAAAAAAAAAGACTAGAAGCCCACAGGGTTGTACTGAACACATCAGTAGCACTATAGTGGATTAGGTGTCTGAAATTCCATATGGATAGAAGATAAAGTGTCTTCATAAAACACATCTGTCTCTCTTAAACAACACTGTCAGCAGCTGTTTCATAAGTGAAAAGCACCGAATGCAACCAAAGCTTCTGATATGTCCAAAGAATTATGGGACATGTAACCACTATTTTTGAGTAAAATAATTTTTTTACATCAATATTTGTTACAAAAATCTTGCAGCTTCTCTTTACTTAATCGTCCGCTTTGCTTTATCAAAACTTCTGGAATCAACCAGAAGAGTAAATCAAGCAATGACACTAAGAAGAACGTCCATATGAAATTTCACATTAATAGAAAAAACACACAGTGATCCCATAGATGCAACAGGAGTATTTAAAATAATTTTGTTTTGTACAAAAACTCTTCCGAGGGACAAATTGAATTATTCAAGCCTGCTGGAGCTTTTTTGAGAGAGCGATCATTTTTAGCTACAATTAACTATTTCAGTCTTGCACTTTTATCTGTGGAAGTATGTAAAAAAAAATTAAAAAAAAAAAAAAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67281 False 1549 lncRNA 0.33 2 12254288 12291965
TU67280 True 916 lncRNA 0.32 2 12266708 12291965

Neighbor

gene id symbol gene type direction distance location
CI01000009_12176488_12184112 OBSL1 coding downstream 68628 12176154 ~ 12185660 (-)
CI01000009_12167744_12175422 NA coding downstream 78866 12167744 ~ 12175422 (-)
CI01000009_12152712_12167719 OBSL1B coding downstream 86569 12152465 ~ 12167719 (-)
CI01000009_12007202_12021667 MFSD6 coding downstream 232251 12006768 ~ 12022037 (-)
CI01000009_11947288_11963040 NAB1, NAB1B coding downstream 291248 11946457 ~ 11963040 (-)
CI01000009_12304891_12322499 NA coding upstream 12724 12304689 ~ 12322924 (-)
CI01000009_12486758_12498650 CALCRLA, CALCRL coding upstream 193661 12485626 ~ 12498650 (-)
CI01000009_12531562_12540003 NA coding upstream 239160 12531125 ~ 12540373 (-)
CI01000009_12643324_12643737 NA coding upstream 351296 12643261 ~ 12643988 (-)
CI01000009_12659018_12693857 COL5A2 coding upstream 366398 12658363 ~ 12694684 (-)
G59099 NA non-coding downstream 11950 12201926 ~ 12242338 (-)
G59094 NA non-coding downstream 53896 12200030 ~ 12200392 (-)
G59090 NA non-coding downstream 56848 12197149 ~ 12197440 (-)
G59088 NA non-coding downstream 65429 12188542 ~ 12188859 (-)
G59035 NA non-coding downstream 105748 12142828 ~ 12148540 (-)
G59151 NA non-coding upstream 74021 12365986 ~ 12369074 (-)
G59184 NA non-coding upstream 81910 12373875 ~ 12374203 (-)
G59185 NA non-coding upstream 82361 12374326 ~ 12374805 (-)
G59186 NA non-coding upstream 82901 12374866 ~ 12375298 (-)
G59200 NA non-coding upstream 101282 12393247 ~ 12393532 (-)
CI01000009_08858198_08860555 NA other downstream 3393725 8856310 ~ 8860563 (-)
G55814 NA other downstream 3826276 8425821 ~ 8428012 (-)
G53515 NA other downstream 6749040 5502395 ~ 5505248 (-)
G52828 NA other downstream 8022819 4217420 ~ 4231469 (-)
CI01000009_03261739_03262843 NA other downstream 8992331 3261038 ~ 3262843 (-)
CI01000009_13975122_13976026 NA other upstream 1683423 13975099 ~ 13978614 (-)
G59490 NA other upstream 1741599 14033564 ~ 14037873 (-)
G59811 NA other upstream 2570432 14862397 ~ 14887464 (-)
G59941 NA other upstream 2840139 15132104 ~ 15132503 (-)
CI01000009_15318811_15390382 TNS1 other upstream 3084295 15318811 ~ 15390382 (-)

Expression


Co-expression Network