G27201


Basic Information

Item Value
gene id G27201
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49028171 ~ 49029684 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36545
TTACTTAACAAGGTTAGACcattaaaaaatctttattccgattaggggtgggcgatatggctctaaaaaaatatcacgatatttcagggtatttttgcgataacgatatacttggcgatataggaaaacagaaaaataattaattaatttcaggaatatagtataagagtataacagcataatcataatgtgtcaaaataaataatatagcataaaataatataatgcagcaaataatactgcagtatatttagtgcatgcatataaactgcaaactaaaacaattatacaataaatacacctaaagctttacagtaaataatagaACTATGATGATACGGATGAATAAttgattctttgtctggttgCCGGTTTCTGTGGGTTGCTGGAAAACTTTGTTAATGGTTCTTTATATATAGGTTTTAAATAGCACCAAACAGGGTTTCACTATTGTTACTATTTTGTGAGTCAAAGAACCCTTTTTGTTGatatgtgtgtttatagtgCGGACTCTTTTAAAAGGGGGTTCTTTAAGGGTCAATGTGTTTTATGGGAACAGCAGTTAATCAAATTACAAATGTGACAAGTACCGTTTACAAGGTTATTTGCTTGGTAAAATGTTTGGACGCTTCAGGTGTTTGACAAGCAATTGGTAAAATATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36545 True 663 lncRNA 0.31 2 49028171 49029684

Neighbor

gene id symbol gene type direction distance location
mdn1 mdn1,LOC107755265,LOC107601919,LOC107737285,LOC107597457 coding downstream 176526 48746900 ~ 48851645 (-)
katna1 katna1,LOC107755263,LOC107683938,LOC107665349,LOC107737259,LOC107597454 coding downstream 292801 48723000 ~ 48735370 (-)
ppil4 ppil4 coding downstream 451578 48562504 ~ 48576593 (-)
cdk19 cdk19 coding downstream 488789 48445377 ~ 48539382 (-)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107727669,LOC107678858 coding downstream 581805 48325885 ~ 48446366 (-)
map3k7 map3k7 coding upstream 90278 49119962 ~ 49147483 (-)
LOC111191920 NA coding upstream 405228 49434912 ~ 49435653 (-)
epha7 epha7 coding upstream 778410 49808094 ~ 49941006 (-)
LOC103033334 NA coding upstream 1544076 50573760 ~ 50580682 (-)
map3k5 map3k5,LOC107653159,LOC107660504 coding upstream 1552663 50582347 ~ 50703118 (-)
G27139 NA non-coding downstream 150692 48858475 ~ 48877479 (-)
G27136 NA non-coding downstream 155707 48854665 ~ 48872464 (-)
G27081 NA non-coding downstream 282827 48745061 ~ 48745344 (-)
G27035 LOC108427529 non-coding downstream 333747 48586047 ~ 48694424 (-)
G27062 NA non-coding downstream 351331 48675753 ~ 48676840 (-)
G27219 NA non-coding upstream 192102 49221786 ~ 49224322 (-)
G27228 NA non-coding upstream 287768 49317452 ~ 49321378 (-)
G27234 NA non-coding upstream 360167 49389851 ~ 49393820 (-)
G27237 NA non-coding upstream 402991 49432675 ~ 49433839 (-)
G27240 NA non-coding upstream 431813 49461497 ~ 49461916 (-)
G27145 NA other downstream 137143 48886994 ~ 48891028 (-)
LOC103039734 LOC108424428 other downstream 703509 48217506 ~ 48324662 (-)
pln NA other downstream 739435 48278262 ~ 48288736 (-)
G26754 NA other downstream 2289435 46704347 ~ 46738736 (-)
fkbp3 fkbp3 other downstream 2492336 46533695 ~ 46535835 (-)
G27258 NA other upstream 609075 49638759 ~ 49639444 (-)
G27400 NA other upstream 1452205 50481889 ~ 50531639 (-)
LOC103034285 NA other upstream 1493215 50522899 ~ 50539672 (-)
pcmt1 pcmt1 other upstream 1695379 50725063 ~ 50740434 (-)
LOC103040973 NA other upstream 3264196 52293880 ~ 52321920 (-)

Expression


Co-expression Network