G27238 (LOC107747660)


Basic Information

Item Value
gene id G27238
gene name LOC107747660
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49447845 ~ 49448221 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU36609
caatcgctccacggacgatgccatcaccaccacccttcatctctccctcacccacctggagaagaaggacacttacgtcagaatgctgtttatagacttcagttcagcattcaacaccatcatcccacagaacctcatcaggaagctaagctcgctcggcctcaacacccccctctgcaactggatcctggactttctgacggggagaccccagtcagtccggttcgggggcagcacctccagcaccatcacactgaacactggggccccccagggcagtgtcctgagtcctctgctgttcaccctgctgactcatgactgtgctgcaaaacacagttctaacagctttatcaagttcgccgatgatacaaccgtgc

Function

NR:

description
PREDICTED: myelin-associated glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36609 True 377 TUCP 0.55 1 49447845 49448221

Neighbor

gene id symbol gene type direction distance location
LOC111191919 NA coding upstream 113923 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 547611 48897216 ~ 48900234 (+)
casp8ap2 NA coding upstream 551866 48884002 ~ 48895979 (+)
ginm1 ginm1 coding upstream 724935 48711573 ~ 48722910 (+)
LOC103042815 NA coding upstream 739896 48699613 ~ 48707949 (+)
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding downstream 1064732 50512953 ~ 50515944 (+)
lrp11 lrp11 coding downstream 1258028 50706249 ~ 50723932 (+)
lats1 lats1,LOC107660506 coding downstream 1309804 50758025 ~ 50768239 (+)
ube2j1 ube2j1 coding downstream 1448140 50896361 ~ 50972664 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 1532294 50980515 ~ 51030792 (+)
G27225 NA non-coding upstream 126467 49317462 ~ 49321378 (+)
G27224 NA non-coding upstream 179219 49268369 ~ 49268626 (+)
G27164 NA non-coding upstream 326109 49118628 ~ 49121736 (+)
G27150 NA non-coding upstream 541297 48904656 ~ 48906548 (+)
G27130 NA non-coding upstream 573629 48854512 ~ 48874216 (+)
G27248 NA non-coding downstream 180313 49628534 ~ 49628797 (+)
G27251 NA non-coding downstream 186635 49634856 ~ 49635084 (+)
G27263 NA non-coding downstream 314762 49762983 ~ 49763258 (+)
G27264 NA non-coding downstream 315097 49763318 ~ 49763743 (+)
G27268 NA non-coding downstream 355207 49803428 ~ 49804506 (+)
G27075 NA other upstream 705406 48741214 ~ 48742439 (+)
G26995 NA other upstream 805940 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 829770 48578803 ~ 48618075 (+)
G26915 NA other upstream 1131951 48278267 ~ 48315894 (+)
fau fau,LOC108411505,LOC107704371 other upstream 2898292 46528368 ~ 46549553 (+)
moxd1 moxd1,LOC107737327 other downstream 891343 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 1296662 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 1321642 50769863 ~ 50772162 (+)
G27489 NA other downstream 1726267 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 2635061 52083282 ~ 52090633 (+)

Expression


Co-expression Network