G27251



Basic Information


Item Value
gene id G27251
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 49634856 ~ 49635084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU36622
ccttgaaatcctaccccttgttgggatcagggtaatcctgtttttttggatcaaagttatccaaatcctactgaaaagttttgaacaacagaaactgaaggtttgatccatttacaaactaggattggattacgtgatctgatccgatttcagaatgcttcttttccttttgaacaacccgttttccagatttgatccaatccgataaccaaaatccgatcagattTCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU36622 True 229 lncRNA 0.38 1 49634856 49635084

Neighbor


gene id symbol gene type direction distance location
LOC111191919 NA coding upstream 300934 49321421 ~ 49333922 (+)
gja10 gja10 coding upstream 734622 48897216 ~ 48900234 (+)
casp8ap2 NA coding upstream 738877 48884002 ~ 48895979 (+)
ginm1 ginm1 coding upstream 911946 48711573 ~ 48722910 (+)
LOC103042815 NA coding upstream 926907 48699613 ~ 48707949 (+)
ctgf ctgf,ctgfa,LOC107683930,LOC107737382,LOC107737295,LOC107593869,LOC107556147 coding downstream 877869 50512953 ~ 50515944 (+)
lrp11 lrp11 coding downstream 1071165 50706249 ~ 50723932 (+)
lats1 lats1,LOC107660506 coding downstream 1122941 50758025 ~ 50768239 (+)
ube2j1 ube2j1 coding downstream 1261277 50896361 ~ 50972664 (+)
LOC103030377 LOC108427479,LOC108256881 coding downstream 1345431 50980515 ~ 51030792 (+)
G27248 NA non-coding upstream 6059 49628534 ~ 49628797 (+)
G27225 NA non-coding upstream 313478 49317462 ~ 49321378 (+)
G27224 NA non-coding upstream 366230 49268369 ~ 49268626 (+)
G27164 NA non-coding upstream 513120 49118628 ~ 49121736 (+)
G27150 NA non-coding upstream 728308 48904656 ~ 48906548 (+)
G27263 NA non-coding downstream 127899 49762983 ~ 49763258 (+)
G27264 NA non-coding downstream 128234 49763318 ~ 49763743 (+)
G27268 NA non-coding downstream 168344 49803428 ~ 49804506 (+)
G27309 NA non-coding downstream 641215 50276299 ~ 50276507 (+)
G27312 NA non-coding downstream 652686 50287770 ~ 50287973 (+)
G27238 LOC107747660 other upstream 186635 49447845 ~ 49448221 (+)
G27075 NA other upstream 892417 48741214 ~ 48742439 (+)
G26995 NA other upstream 992951 48555797 ~ 48641905 (+)
LOC103035773 NA other upstream 1016781 48578803 ~ 48618075 (+)
G26915 NA other upstream 1318962 48278267 ~ 48315894 (+)
moxd1 moxd1,LOC107737327 other downstream 704480 50339564 ~ 50408570 (+)
nup43 nup43 other downstream 1109799 50744883 ~ 50753961 (+)
lyrm2 lyrm2 other downstream 1134779 50769863 ~ 50772162 (+)
G27489 NA other downstream 1539404 51174488 ~ 51178374 (+)
dsel dsel,LOC108411752,LOC105896186,LOC106590194 other downstream 2448198 52083282 ~ 52090633 (+)

Expression



Co-expression Network